CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.18395.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.58 75.1 Zm.18395.1.S1_at CO527972 - - 9e+0 At5g04150 BHLH101 S.X. H.G.
0.82 94.6 Zm.3025.1.S1_at AW288746 - - 1e+1 At5g11500 unknown protein S.X. H.G.
0.78 92.5 ZmAffx.280.1.S1_at AI670408 - - 3e+1 Atcg00070 - S.X. H.G.
0.73 89.9 ZmAffx.1090.1.A1_at AW065404 - - 1e+1 At3g57958 unknown protein S.X. H.G.
0.70 87.0 Zm.17378.3.A1_at BM078177 - - 3e-1 At5g58640 selenoprotein-related S.X. H.G.
0.67 85.8 Zm.4224.1.A1_at CF019878 COX VIIa-like protein - 5e+0 At3g55680 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.60 77.8 Zm.8702.1.A1_at AI734669 - - 5e-19 At1g04140 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.50 65.7 ZmAffx.281.1.A1_at AI670409 - - 3e+0 At5g46795 MSP2 (microspore-specific promoter 2) S.X. H.G.
0.36 41.3 Zm.4156.1.A1_at BG840200 - - 7e+0 At5g03380 heavy-metal-associated domain-containing protein S.X. H.G.
0.31 31.6 Zm.5791.2.A1_at AW438331 - - 2e-2 At4g23570 SGT1A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.5 99.1 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
14.1 98.8 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
13.2 98.8 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
13.0 98.7 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.8 98.7 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.5 98.6 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.3 98.5 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.1 98.4 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.6 98.3 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.0 98.2 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-14 79 Zm.18996.1.A1_at CF058484 hypothetical protein LOC100216711 - 4e-8 At2g26660 SPX2 (SPX DOMAIN GENE 2) C.G. S.X.
0.03 4e-3 42 Zm.15937.1.A1_at CO520791 - - 5e+0 At3g25200 unknown protein C.G. S.X.
0.02 2e-1 36 Zm.2875.1.A1_at BG842372 - - 8e+0 At3g09380 - C.G. S.X.
0.01 2e-1 36 Zm.18079.1.A1_at CO526802 hypothetical protein LOC100191747 - 9e-4 At1g50710 unknown protein C.G. S.X.
0.01 2e-1 36 Zm.15724.1.S1_at CD441358 - - 3e+0 At2g41110 CAM2 (CALMODULIN 2) C.G. S.X.
0.01 2e-1 36 Zm.14322.1.A1_at AY104923.1 - - 5e-2 At2g03160 ASK19 (ARABIDOPSIS SKP1-LIKE 19) C.G. S.X.
0.02 2e-1 36 Zm.13727.1.A1_at CK986131 NADPH quinone oxidoreductase 1 - 2e-6 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) C.G. S.X.
0.01 9e-1 34 Zm.9481.1.A1_at BM269226 hypothetical protein LOC100192909 - 3e+0 At2g46230 - C.G. S.X.
0.01 9e-1 34 Zm.7598.1.A1_at CF629653 - - 3e-3 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e+0 32 Arabidopsis thaliana At5g04150 830293 BHLH101 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF - - - C.G. S.X.
0.05 8e-1 36 Glycine max PsAffx.CL909Contig1_at PsAffx.CL909Contig1 - - 2e+1 At5g64140 RPS28 (RIBOSOMAL PROTEIN S28) C.G. S.X.
0.16 3e-19 95 Hordeum vulgare Contig18975_at Contig18975 - - 4e-1 At2g45130 SPX3 (SPX DOMAIN GENE 3) C.G. S.X.
0.53 2e-67 258 Oryza sativa Os03g0406100 AK063600.1 - SPX, N-terminal domain containing protein 1e+0 At3g21465 unknown protein C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.219224.1.S1_at pmrna35081 hypothetical protein - 6e+0 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) C.G. S.X.
0.21 8e-31 135 Triticum aestivum TaAffx.115546.1.S1_at CA615160 - - 7e+0 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1610213_at BQ798061 similar to somatic embryogenesis receptor-like kinase 3 - 8e-11 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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