Gene omics information

Query gene ID	Zm.18388.1.A1_at
Gene name	hypothetical protein LOC100273514
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18388.1.A1_at	CB604567	hypothetical protein LOC100273514	-	1e-1	At3g46620	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.828.1.A1_at	AI734461	hypothetical protein LOC100277560	-	5e+0	At3g21371	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.12968.1.S1_at	CO528187	pyruvate dehydrogenase E1 component subunit beta	-	3e-62	At1g30120	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	S.X.	H.G.	Please select
0.44	55.7	Zm.5917.1.A1_a_at	BM337345	hypothetical protein LOC100192679	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	S.X.	H.G.	Please select
0.39	45.6	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	S.X.	H.G.	Please select
0.33	36.0	Zm.5595.1.A1_at	CD442436	hypothetical protein LOC100278654	-	3e-34	At2g29080	ftsh3 (FtsH protease 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.2	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.0	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	2e-91	335	Zm.15916.1.S1_at	CF244293	-	-	1e+0	At1g62480	vacuolar calcium-binding protein-related	C.G.	S.X.	Please select
0.33	2e-91	335	Zm.15916.1.A1_at	AY107625.1	-	-	1e+0	At1g62480	vacuolar calcium-binding protein-related	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.7004.1.A1_at	CD447791	-	-	7e-10	At2g33800	ribosomal protein S5 family protein	C.G.	S.X.	Please select
0.03	6e-2	38	Zm.17645.1.A1_at	CK368768	hypothetical protein LOC100193071	-	3e-10	At4g38900	bZIP protein	C.G.	S.X.	Please select
0.03	6e-2	38	Zm.11944.1.A1_at	CK826733	transcription factor RF2b	-	3e-3	At1g43700	VIP1 (VIRE2-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.4142.1.A1_at	AI855154	-	-	3e+0	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.3900.1.S1_at	BM073698	-	-	9e-56	At2g07690	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.14138.2.A1_a_at	CD219182	hypothetical protein LOC100275347	-	3e-9	At1g56423	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.14138.2.A1_at	CD219182	hypothetical protein LOC100275347	-	3e-9	At1g56423	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At3g46620	823815	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-8	59	Glycine max	GmaAffx.76052.1.S1_at	CA785545	bZIP transcription factor bZIP43	-	5e-22	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select
0.31	1e-30	133	Hordeum vulgare	Contig23383_at	Contig23383	-	-	7e-6	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select
0.33	1e-70	268	Oryza sativa	Os07g0679500	AK102562.1	-	BZIP transcription factor RF2b	8e-10	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.2902.1.S1_at	BP930588	-	-	4e-18	At1g43700	VIP1 (VIRE2-INTERACTING PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	4e-23	109	Triticum aestivum	Ta.4604.1.S1_at	CD937419	-	-	2e-3	At2g40620	bZIP transcription factor family protein	C.G.	S.X.	Please select
0.08	4e-5	48	Vitis vinifera	1621585_at	CK138212.1	hypothetical protein LOC100247888	-	2e-3	At1g43700	VIP1 (VIRE2-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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