Gene omics information

Query gene ID	Zm.18385.1.S1_at
Gene name	hypothetical protein LOC100276763
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.5481.2.A1_at	AW017536	dek protein	-	1e-3	At3g48710	-	S.X.	H.G.	Please select
0.67	85.8	Zm.280.1.A1_at	U58208.1	Binding protein homolog1	-	0	At5g42020	BIP2	S.X.	H.G.	Please select
0.67	85.8	Zm.1835.2.A1_at	CK985959	cortical cell-delineating protein	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	S.X.	H.G.	Please select
0.32	33.4	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	S.X.	H.G.	Please select
0.14	7.7	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	34	Zm.10642.1.A1_at	BQ539388	hypothetical protein LOC100192619	-	2e+0	At1g12411	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7360.1.A1_at	CK827608	hypothetical protein LOC100273922	-	3e-27	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7411.1.A1_at	BM072807	hypothetical protein LOC100277462	-	2e+0	At2g14390	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5630.1.A1_at	AY093419.1	SET domain protein 105	-	5e-3	At1g73100	SUVH3 (SU(VAR)3-9 HOMOLOG 3)	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.5145.1.S1_at	AY104006.1	6,7-dimethyl-8-ribityllumazine synthase	-	5e-7	At2g44050	COS1 (COI1 SUPPRESSOR1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.18882.1.S1_at	CO529872	-	-	5e-1	At4g03180	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13184.1.S1_at	CA409097	-	-	2e-1	At2g20620	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.10473.1.A1_at	CA405106	Hypothetical protein LOC100192820	-	5e-2	At3g11220	Paxneb protein-related	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9590.1.A1_at	CK986177	-	-	6e-1	At1g75220	integral membrane protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At3g47810	823935	MAG1 (MAIGO 1)	Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.85292.1.S1_at	BG511608	-	-	3e-1	At4g00880	auxin-responsive family protein	C.G.	S.X.	Please select
0.15	3e-12	71	Hordeum vulgare	Contig25585_at	Contig25585	-	-	3e-1	At2g28870	unknown protein	C.G.	S.X.	Please select
0.17	2e-16	87	Oryza sativa	Os09g0372400	AK064341.1	-	Hypothetical protein	2e-1	At1g20240	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.105210.1.S1_s_at	BU830265	hypothetical protein	-	9e-1	At3g17100	transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.7357.1.S1_at	CA661210	-	-	1e+0	At5g07580	DNA binding / transcription factor	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1621391_at	CD801716	hypothetical protein LOC100251148	-	4e+0	At5g47980	transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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