Gene omics information

Query gene ID	Zm.18381.1.A1_s_at
Gene name	Hypothetical protein LOC100216796
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	S.X.	H.G.	Please select
0.73	89.9	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	S.X.	H.G.	Please select
0.09	4.0	Zm.4738.1.A1_at	CF013255	-	-	2e-23	At1g14610	TWN2 (TWIN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	99.0	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.0	98.7	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.8	98.7	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.5	98.7	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.5	98.1	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.7	97.9	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.4	97.5	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.7	97.2	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1429	Zm.18381.1.A1_at	CO523274	-	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6990.1.S1_at	AY105684.1	nuclear transcription factor Y subunit C-2	-	9e-9	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17802.1.A1_at	BM499164	-	-	3e+0	At3g26742	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.17353.1.A1_at	CK371601	-	-	4e+0	At1g53625	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.12014.1.A1_at	BM382651	adenosine 5'-phosphosulfate reductase 1	-	2e-1	At1g62180	APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.8336.1.S2_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.8336.1.S1_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.7641.1.A1_at	BM351144	-	-	2e+0	At1g01350	nucleic acid binding / protein binding / zinc ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At3g03720	821176	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.CL2408Contig1_at	PsAffx.CL2408Contig1	-	-	5e+0	At1g21890	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.31	7e-32	137	Hordeum vulgare	Contig19313_at	Contig19313	-	-	1e+0	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	C.G.	S.X.	Please select
0.23	5e-76	286	Oryza sativa	Os.27027.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.211402.1.S1_x_at	pmrna22347	hypothetical protein	-	2e+0	At5g42825	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-36	153	Triticum aestivum	Ta.6849.1.S1_at	CK163325	-	-	8e-1	At4g21190	emb1417 (embryo defective 1417)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1616983_at	CF207498	hypothetical protein LOC100254117	-	1e+0	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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