Gene omics information

Query gene ID	Zm.18376.1.A1_at
Gene name	hypothetical protein LOC100274438
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18376.1.A1_at	AI615179	hypothetical protein LOC100274438	-	2e-22	At4g02630	protein kinase family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.13669.1.S1_x_at	AY107043.1	-	-	2e-1	At3g26420	ATRZ-1A	S.X.	H.G.	Please select
0.50	65.7	Zm.3001.1.A1_at	CK826660	-	-	7e-1	At3g18760	ribosomal protein S6 family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.6402.3.S1_a_at	AI770444	DELLA protein DWARF8 /// dwarf plant9	-	8e-1	At5g42635	glycine-rich protein	S.X.	H.G.	Please select
0.36	41.3	Zm.4768.1.A1_at	AY107116.1	hypothetical protein LOC100192636	-	5e-30	At1g64550	ATGCN3	S.X.	H.G.	Please select
0.23	18.6	Zm.5578.2.S1_a_at	BM380773	hypothetical protein LOC100193656	-	1e-4	At5g48335	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.3	96.9	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	5e-108	391	Zm.14391.1.A1_at	CA998702	hypothetical protein LOC100273626	-	1e-7	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.04	1e-6	54	Zm.16645.1.S1_at	CF648747	hypothetical protein LOC100191852	-	1e-11	At1g56720	protein kinase family protein	C.G.	S.X.	Please select
0.03	8e-5	48	Zm.689.1.S1_at	BM074684	serine/threonine-protein kinase receptor	-	2e-6	At3g09010	protein kinase family protein	C.G.	S.X.	Please select
0.05	1e-3	44	Zm.4589.1.A1_at	CA401701	Protein kinase-like	-	4e-31	At3g59110	protein kinase family protein	C.G.	S.X.	Please select
0.06	5e-3	42	Zm.3405.1.A1_at	AI737775	-	-	4e-4	At2g30940	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Zm.5412.1.A1_at	CF635537	hypothetical protein LOC100280167	-	3e-6	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.2347.1.S1_at	AW424529	-	-	3e-11	At1g72300	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.13719.1.A1_at	AY106357.1	protein kinase APK1A	-	1e-12	At1g07570	APK1A	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.359.1.S1_at	U82481.1	kinase interacting kinase1	-	2e-6	At3g16030	CES101 (CALLUS EXPRESSION OF RBCS 101)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-22	107	Arabidopsis thaliana	At4g02630	828217	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	5e-24	113	Glycine max	Gma.1097.1.S1_at	BM092770	-	-	5e-17	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.48	0	793	Hordeum vulgare	Contig13522_at	Contig13522	-	-	4e-17	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.50	0	1055	Oryza sativa	Os04g0430000	AK100142.1	-	Ser Thr specific protein kinase-like protein	7e-8	At4g01330	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	3e-4	48	Populus trichocarpa	PtpAffx.205357.1.S1_at	pmrna10606	hypothetical protein	-	9e-34	At4g02630	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	3e-6	54	Triticum aestivum	Ta.7738.1.S1_at	CD907936	-	-	3e-19	At3g59110	protein kinase family protein	C.G.	S.X.	Please select
0.20	4e-15	81	Vitis vinifera	1610530_at	CB971103	hypothetical protein LOC100243696	-	7e-34	At4g02630	protein kinase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage