Gene omics information

Query gene ID	Zm.1835.2.A1_at
Gene name	cortical cell-delineating protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.1835.2.A1_at	CK985959	cortical cell-delineating protein	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	S.X.	H.G.	Please select
0.67	85.8	Zm.5481.2.A1_at	AW017536	dek protein	-	1e-3	At3g48710	-	S.X.	H.G.	Please select
0.61	79.5	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	S.X.	H.G.	Please select
0.60	77.8	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.536.1.A1_at	AI711796	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	S.X.	H.G.	Please select
0.22	16.9	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	98.7	GSM206315	Upper pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.6	98.6	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.5	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	718	Zm.1835.1.A1_at	CK368819	cortical cell-delineating protein	-	2e+0	At2g25820	transcription factor	C.G.	S.X.	Please select
0.45	2e-133	474	Zm.16311.1.A1_at	CF633255	-	-	5e+0	At2g40330	Bet v I allergen family protein	C.G.	S.X.	Please select
0.37	2e-93	341	Zm.1575.1.A1_at	BM073224	-	-	6e+0	At2g25820	transcription factor	C.G.	S.X.	Please select
0.36	8e-90	329	Zm.5746.1.A1_at	CK986017	-	-	4e-1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.22	1e-51	202	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select
0.22	4e-42	171	Zm.16964.1.S1_at	AI948237	-	-	8e-3	At5g19090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.17	2e-22	105	Zm.2376.2.S1_x_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.15	2e-22	105	Zm.2376.2.S1_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.19	3e-21	101	Zm.2376.1.A1_a_at	AF001634.1	physical impedance induced protein /// cortical cell-delineating protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g26660	822278	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	F:unknown;P:biological_process unknown;C:membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-3	42	Glycine max	GmaAffx.80464.1.S1_at	CA850542	-	-	4e-5	At4g12490	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.42	4e-58	224	Hordeum vulgare	Contig11853_at	Contig11853	-	-	2e+0	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select
0.46	3e-117	422	Oryza sativa	Os04g0554500	AY466109.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At2g25820	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-2	40	Populus trichocarpa	Ptp.3942.1.S1_a_at	BU863654	hypothetical protein	-	5e-6	At4g26480	KH domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	1e-127	456	Triticum aestivum	TaAffx.58540.1.S1_at	CA618733	-	-	5e-3	At4g12510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1614992_at	CF415269	hypothetical protein LOC100263906	-	1e-18	At1g16740	ribosomal protein L20 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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