Gene omics information

Query gene ID	Zm.18323.1.A1_a_at
Gene name	hypothetical protein LOC100193167
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.18323.1.A1_a_at	CO532638	hypothetical protein LOC100193167	-	5e-1	At4g27120	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9559.1.S1_at	AY461584.1	inward rectifying shaker K+ channel	-	6e-21	At5g46240	KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.16907.1.S1_at	AI691771	-	-	4e-50	At3g18000	XPL1 (XIPOTL 1)	S.X.	H.G.	Please select
0.55	71.6	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	S.X.	H.G.	Please select
0.22	16.9	Zm.16904.2.A1_x_at	BM381185	-	-	6e+0	At5g57565	protein kinase family protein	S.X.	H.G.	Please select
0.22	16.9	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.2	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.7	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.5	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	1193	Zm.18323.1.A1_at	CO532638	Hypothetical protein LOC100193167	-	5e-1	At4g27120	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.5081.1.S1_at	AW216015	hypothetical protein LOC100274512	-	5e-42	At1g10940	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.4754.1.A1_at	BG266528	60S ribosome subunit biogenesis protein NIP7	-	2e+0	At5g14070	ROXY2	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.4184.1.A1_at	CA404216	26S proteasome non-ATPase regulatory subunit 14	-	7e-38	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.18583.1.A1_at	BM267470	hypothetical protein LOC100273939	-	1e+0	At1g63105	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9467.1.A1_at	BM269106	-	-	1e+0	At1g55950	-	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8344.1.A1_at	CO526131	ZIM motif family protein	-	5e-4	At1g70700	TIFY7	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7908.1.A1_at	BM080382	-	-	1e+0	At3g10020	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6490.1.A1_at	AY108673.1	hypothetical protein LOC100193949	-	4e-2	At1g55750	transcription factor-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At4g27120	828820	unknown protein	F:unknown;P:unknown;C:unknown;MOFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	GmaAffx.78481.1.S1_at	BM520620	-	-	7e-15	At4g25280	adenylate kinase family protein	C.G.	S.X.	Please select
0.09	6e-5	48	Hordeum vulgare	Contig15975_at	Contig15975	-	-	4e-8	At5g67110	ALC (ALCATRAZ)	C.G.	S.X.	Please select
0.09	4e-9	63	Oryza sativa	Os06g0164400	D43106	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	6e+0	At4g12860	UNE14 (unfertilized embryo sac 14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.201979.1.S1_at	pmrna3951	hypothetical protein	-	3e-26	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.105165.1.S1_at	CA738299	-	-	3e+0	At2g18320	-	C.G.	S.X.	Please select
0.03	9e+0	30	Vitis vinifera	1621915_at	CF211117	-	-	1e-3	At3g13170	ATSPO11-1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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