Gene omics information

Query gene ID	Zm.18304.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18304.1.S1_at	CO522721	-	-	6e-14	At5g49900	catalytic/ glucosylceramidase	S.X.	H.G.	Please select
0.55	71.6	Zm.10708.1.A1_at	BQ619472	hypothetical protein LOC100272302	-	3e-24	At2g46860	AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)	S.X.	H.G.	Please select
0.50	65.7	Zm.19025.1.S1_at	CO532512	hypothetical protein LOC100192597	-	1e+0	At1g48440	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.19152.1.A1_at	CK827126	-	-	5e-8	At4g09570	CPK4	S.X.	H.G.	Please select
0.23	18.6	Zm.3505.1.A1_at	AW091289	hypothetical protein LOC100191273	-	1e-11	At2g03290	protein transmembrane transporter	S.X.	H.G.	Please select
0.22	16.9	Zm.3531.1.A1_at	BQ035123	p5cs	-	5e-12	At3g55610	P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.2	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	36	Zm.4602.1.A1_at	AI737296	-	-	1e-1	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.884.1.A2_at	BM072777	phosphofructose kinase1	-	1e-69	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.884.1.A1_at	AF334143.1	phosphofructose kinase1	-	1e-69	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.6948.1.A1_at	AW288752	serine/threonine-protein phosphatase PP1	-	8e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.9012.1.A1_at	CA403655	-	-	2e+0	At5g63090	LOB (LATERAL ORGAN BOUNDARIES)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.8053.1.A1_at	AY106785.1	hypothetical protein LOC100273786 /// xaa-Pro aminopeptidase 1	-	6e-14	At4g36760	ATAPP1	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.7115.1.S1_at	BM378861	hypothetical protein LOC100193854	-	1e-69	At5g58030	transport protein particle (TRAPP) component Bet3 family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.674.1.S1_at	AF332179.1	beta-expansin 6	-	9e+0	At4g26470	calcium ion binding	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.4128.1.S1_a_at	AF545814.1	SET domain protein 110	-	5e-2	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-14	79	Arabidopsis thaliana	At5g49900	835053	catalytic/ glucosylceramidase	F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	2e-21	105	Glycine max	GmaAffx.19904.1.S1_at	BU761513	-	-	1e-33	At5g49900	catalytic/ glucosylceramidase	C.G.	S.X.	Please select
0.42	7e-114	410	Hordeum vulgare	Contig13060_at	Contig13060	-	-	5e-10	At4g10060	catalytic/ glucosylceramidase	C.G.	S.X.	Please select
0.49	0	1275	Oryza sativa	Os11g0242100	AK069387.1	-	Protein of unknown function DUF608 domaincontaining protein	8e-12	At5g49900	catalytic/ glucosylceramidase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	6e-21	103	Populus trichocarpa	PtpAffx.148459.1.S1_at	BU895346	hypothetical protein	-	7e-24	At5g49900	catalytic/ glucosylceramidase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	6e-113	408	Triticum aestivum	Ta.20469.1.S1_at	CA642463	-	-	1e-14	At5g49900	catalytic/ glucosylceramidase	C.G.	S.X.	Please select
0.11	4e-3	42	Vitis vinifera	1618000_at	CD721411	-	-	2e-55	At3g24180	catalytic/ glucosylceramidase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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