Gene omics information

Query gene ID	Zm.18271.1.A1_at
Gene name	hypothetical protein LOC100279620
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.8	Zm.18271.1.A1_at	CO531473	hypothetical protein LOC100279620	-	5e-7	At3g44720	ADT4 (arogenate dehydratase 4)	S.X.	H.G.	Please select
0.48	61.3	Zm.14411.1.A1_a_at	AI491646	membrane steroid-binding protein 1	-	7e-16	At3g48890	ATMP2	S.X.	H.G.	Please select
0.43	52.8	Zm.1874.1.A1_at	CF007505	NADH-ubiquinone oxidoreductase 18 kDa subunit	-	3e-11	At5g67590	FRO1 (FROSTBITE1)	S.X.	H.G.	Please select
0.41	49.7	Zm.2147.1.A1_a_at	BM380613	glycine-rich cell wall structural protein	-	4e-1	At4g01995	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.8309.1.S1_at	CF626652	quinone oxidoreductase	-	3e-6	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.12929.1.S1_at	CA401841	hypothetical protein LOC100277281	-	8e+0	At2g06908	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.17719.1.S1_at	CK370127	hypothetical protein LOC100278756	-	4e+0	At4g31930	mitochondrial glycoprotein family protein / MAM33 family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.7858.1.A1_at	AY108500.1	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	S.X.	H.G.	Please select
0.34	37.2	Zm.19158.2.S1_at	BM073998	thioredoxin F-type	-	3e-11	At5g16400	ATF2	S.X.	H.G.	Please select
0.33	36.0	Zm.13055.1.S1_at	CF637576	-	-	2e-14	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.3	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.5	98.8	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.4	98.7	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.9	98.6	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.6	98.6	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.4	98.5	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.7	98.1	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.2	98.0	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.2	97.4	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	648	Zm.19339.1.A1_at	BM268084	hypothetical protein LOC100193934	-	4e-7	At1g08250	ADT6 (arogenate dehydratase 6)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.543.1.S1_at	AF244678.1	glutathione transferase13	-	2e+0	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.16826.1.A1_at	CF752095	-	-	2e+0	At4g01420	CBL5 (CALCINEURIN B-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.59.1.A1_at	AI665091	-	-	1e+1	At5g53960	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.59.1.S1_at	AI665091	-	-	1e+1	At5g53960	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.949.1.A1_at	CF624182	-	-	1e-1	At5g15970	KIN2	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.949.1.A1_s_at	CF624182	hypothetical protein LOC100280024	-	1e-1	At5g15970	KIN2	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.7133.1.A1_at	CK369431	hypothetical protein LOC100272867	-	2e-19	At2g45790	PMM (PHOSPHOMANNOMUTASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	5e-7	56	Arabidopsis thaliana	At3g44720	823601	ADT4 (arogenate dehydratase 4)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	34	Glycine max	Gma.17915.1.S1_at	BI968720	-	-	1e-15	At1g08250	ADT6 (arogenate dehydratase 6)	C.G.	S.X.	Please select
0.34	2e-122	438	Hordeum vulgare	Contig6732_at	Contig6732	-	-	6e-14	At3g44720	ADT4 (arogenate dehydratase 4)	C.G.	S.X.	Please select
0.36	3e-105	383	Oryza sativa	Os04g0406600	AK103609.1	-	Prephenate dehydratase domain containing protein	5e-2	At5g22630	ADT5 (arogenate dehydratase 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+1	32	Populus trichocarpa	PtpAffx.217460.1.S1_at	pmrna32727	hypothetical protein	-	4e-1	At4g24590	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	2e-133	476	Triticum aestivum	Ta.9122.1.S1_at	CK208308	-	-	6e-14	At3g44720	ADT4 (arogenate dehydratase 4)	C.G.	S.X.	Please select
0.03	9e-3	40	Vitis vinifera	1609932_at	CB970042	hypothetical protein LOC100267022	-	2e-21	At1g08250	ADT6 (arogenate dehydratase 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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