Gene omics information

Query gene ID	Zm.18265.1.A1_at
Gene name	hypothetical protein LOC100277671
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.35	38.9	Zm.18265.1.A1_at	CA404918	hypothetical protein LOC100277671	-	5e+0	At3g27590	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.6403.1.A1_s_at	AI691706	Hypothetical protein LOC100216936	-	3e+0	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	S.X.	H.G.	Please select
0.44	55.7	Zm.6532.7.A1_x_at	BM075609	dehydrin 13	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	S.X.	H.G.	Please select
0.29	28.1	Zm.1389.2.S1_at	AI737173	-	-	2e+0	At1g18720	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.18311.1.S1_at	CO534615	-	-	1e-1	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	S.X.	H.G.	Please select
0.29	28.1	Zm.6729.2.A1_at	AI395991	lysine ketoglutarate reductase trans-splicing related 1	-	4e-23	At2g28310	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.5	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.3	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-3	40	Zm.4631.1.A1_at	BG266347	-	-	3e+0	At1g51360	DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.4978.1.A1_at	AW331789	patellin-1	-	1e-1	At5g37590	binding	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.17916.1.S1_at	CF633017	hypothetical protein LOC100193759	-	4e-1	At3g03776	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7715.1.A1_at	AY107162.1	wiscott-Aldrich syndrome, C-terminal	-	5e-1	At5g12320	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2724.1.S1_at	BQ538519	hypothetical protein LOC100193244	-	3e-13	At3g22960	PKP-ALPHA	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.10213.1.S1_at	CK786995	-	-	7e-1	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.9549.2.A1_at	BM332597	hypothetical protein LOC100191610	-	1e-32	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.9549.2.A1_a_at	BM332597	hypothetical protein LOC100191610	-	1e-32	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.9537.1.A1_at	BM348544	hypothetical protein LOC100193444 /// IAA15 - auxin-responsive Aux/IAA family member	-	2e-4	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At3g27590	822381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.48711.1.S1_at	AW706664	-	-	5e-2	At4g25440	ZFWD1 (zinc finger WD40 repeat protein 1)	C.G.	S.X.	Please select
0.04	6e-1	34	Hordeum vulgare	HW05G09u_at	HW05G09u	-	-	2e+0	At3g03828	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os02g0531400	9630.m03126	-	-	4e-1	At4g36900	RAP2.10 (related to AP2 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.215534.1.S1_s_at	pmrna29789	hypothetical protein	-	1e-20	At5g46070	GTP binding / GTPase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	36	Triticum aestivum	Ta.8608.1.A1_x_at	BQ162121	-	-	4e+0	At3g27590	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1615592_at	CF372516	-	-	1e+0	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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