Gene omics information

Query gene ID	Zm.18241.1.S1_at
Gene name	PP protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.18241.1.S1_at	AI738184	PP protein	-	7e-29	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	S.X.	H.G.	Please select
0.71	88.2	Zm.3436.1.A1_at	AI964659	hypothetical protein LOC100217002	-	1e-20	At3g54190	-	S.X.	H.G.	Please select
0.61	79.5	Zm.16419.1.S1_at	CF273296	hypothetical protein LOC100276284	-	2e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	S.X.	H.G.	Please select
0.44	55.7	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select
0.40	48.5	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.26	22.7	Zm.3418.1.A1_at	CF624427	-	-	2e+0	At4g33465	SCRL22 (SCR-Like 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	97.4	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.1	96.8	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.9	96.7	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.8	96.6	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.6	96.4	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.4	96.2	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.3	96.1	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.2	96.0	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.1	95.9	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.73	0	1435	Zm.1697.1.S1_at	AY621066.1	Protein phosphatase 2C	-	5e-33	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.07	6e-6	52	Zm.6624.1.S1_at	AI491254	hypothetical protein LOC100192535	-	4e-27	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.03	1e-3	44	Zm.17273.1.S1_at	CF638111	hypothetical protein LOC100273148	-	8e-4	At5g53140	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.06	8e-2	38	Zm.796.1.A1_a_at	CK370719	-	-	3e-9	At5g53140	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.8220.1.S1_at	AY581895.1	hypothetical protein LOC100280251	-	2e-26	At2g02860	SUT2 (SUCROSE TRANSPORTER 2)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.5159.1.A1_at	CA403363	hypothetical protein LOC100191167	-	1e-2	At4g28400	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.9111.3.A1_x_at	CF633468	-	-	3e-1	At2g31850	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.9111.2.A1_a_at	BM266662	flavoprotein wrbA	-	3e-1	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.9111.2.A1_x_at	BM266662	flavoprotein wrbA	-	3e-1	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	7e-29	129	Arabidopsis thaliana	At4g31750	829303	WIN2 (HOPW1-1-INTERACTING 2)	Encodes HopW1-1-Interacting protein 2 (WIN2). Interacts with the P. syringae effector HopW1-1. WIN2 has protein phosphatase activity. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	5e-49	196	Glycine max	Gma.10933.5.S1_at	AW310411	-	-	7e-122	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.41	7e-157	553	Hordeum vulgare	Contig2995_at	Contig2995	-	-	4e-24	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.42	4e-155	549	Oryza sativa	Os02g0149800	CB682796	-	Protein phosphatase 2C family protein	3e-28	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	1e-46	188	Populus trichocarpa	PtpAffx.206852.1.S1_at	pmrna13612	hypothetical protein	-	3e-136	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	5e-141	502	Triticum aestivum	Ta.21959.1.S1_at	BJ322991	-	-	7e-23	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.16	1e-21	103	Vitis vinifera	1613206_at	CF516257	-	-	7e-86	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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