CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.18133.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 95.8 Zm.18133.1.A1_at AY103981.1 - - 8e-38 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) S.X. H.G.
0.65 82.1 Zm.18125.1.S1_at CN844337 - - 4e-1 At3g47380 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.62 79.8 Zm.12433.1.S1_s_at AY105016.1 tyrosyl-tRNA synthetase - 4e-18 At2g33840 tRNA synthetase class I (W and Y) family protein S.X. H.G.
0.60 77.8 Zm.12997.1.S1_at CA402647 - - 2e-21 At3g46740 TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III) S.X. H.G.
0.59 76.1 Zm.9290.1.A1_at AY108360.1 hypothetical protein LOC100192546 - 7e-1 At5g58260 - S.X. H.G.
0.58 75.1 Zm.18278.1.S1_at CK371368 - - 1e-26 At3g52200 LTA3 S.X. H.G.
0.57 75.1 Zm.14792.1.A1_at AI666236 - - 4e+0 At3g62340 WRKY68 S.X. H.G.
0.56 74.4 ZmAffx.772.1.S1_at AI746167 - - 3e+0 At1g30840 ATPUP4 S.X. H.G.
0.54 69.8 Zm.5093.1.A1_at AI600800 GAGA-binding protein - 4e-4 At1g14685 BPC2 (BASIC PENTACYSTEINE 2) S.X. H.G.
0.54 69.8 Zm.13417.1.A1_at CA400681 hypothetical protein LOC100193979 - 4e-1 At3g05830 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.2 99.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5 99.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4 99.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0 99.2 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7 99.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2 96.0 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 3079 Zm.18133.1.S1_at AY103981.1 - - 8e-38 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.64 0 1291 Zm.13153.1.A1_at BI993275 RHM1 - 2e-32 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.49 1e-37 157 Zm.13518.1.A1_at CO522595 hypothetical protein LOC100191391 - 3e-43 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.03 2e-2 40 Zm.9208.1.S1_at AY104924.1 dTDP-4-dehydrorhamnose reductase - 4e-11 At1g63000 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) C.G. S.X.
0.01 3e-1 36 Zm.4225.1.S1_at AW225317 hypothetical protein LOC100192639 - 3e-6 At1g04960 - C.G. S.X.
0.01 1e+0 34 Zm.9712.1.A1_at BM336467 - - 9e-2 At5g25810 tny (TINY) C.G. S.X.
0.01 1e+0 34 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor C.G. S.X.
0.01 1e+0 34 Zm.2311.1.A1_at AY187718.1 SET domain protein SDG111 - 3e-4 At1g73100 SUVH3 (SU(VAR)3-9 HOMOLOG 3) C.G. S.X.
0.01 1e+0 34 Zm.10335.1.A1_at CF016467 dnaJ subfamily C member 8 - 2e-4 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 8e-38 159 Arabidopsis thaliana At1g78570 844193 RHM1 (RHAMNOSE BIOSYNTHESIS 1) Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli. - - - C.G. S.X.
0.39 9e-54 212 Glycine max Gma.7572.1.S1_at BI970498 - - 5e-77 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.52 0 737 Hordeum vulgare Contig4348_at Contig4348 - - 1e-84 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.54 0 827 Oryza sativa Os03g0278200 AK103544.1 - NAD-dependent epimerase/dehydratase family protein 6e-83 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.33 3e-32 141 Populus trichocarpa PtpAffx.5688.1.S1_at CV238865 hypothetical protein - 9e-72 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.55 0 773 Triticum aestivum Ta.28218.1.S1_a_at CK157558 - - 2e-58 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.38 5e-52 204 Vitis vinifera 1614216_at CF512284 hypothetical protein LOC100260586 - 2e-72 At1g53500 MUM4 (MUCILAGE-MODIFIED 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage