Gene omics information

Query gene ID	Zm.18109.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.18109.1.S1_at	AI881274	-	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.5115.1.A1_at	AI600917	hypothetical protein LOC100272658	-	2e-46	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.13196.1.S1_at	AY105985.1	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	S.X.	H.G.	Please select
0.40	48.5	Zm.1134.1.A1_at	AY112160.1	hypothetical protein LOC100193278	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	S.X.	H.G.	Please select
0.33	36.0	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.7	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	813	Zm.18109.1.S1_s_at	AI881274	transglutaminase	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
1.00	0	813	Zm.18109.1.A1_at	AI881274	-	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.23	7e-126	448	Zm.15714.1.S1_a_at	AJ488103.1	transglutaminase	-	7e-2	At4g33660	unknown protein	C.G.	S.X.	Please select
0.08	7e-12	69	Zm.5578.2.S1_a_at	BM380773	hypothetical protein LOC100193656	-	1e-4	At5g48335	unknown protein	C.G.	S.X.	Please select
0.04	1e-4	46	Zm.16344.1.S1_at	CF349134	prostaglandin E synthase 3	-	2e-6	At3g03773	-	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.3794.1.S1_at	AY370763.1	phosphatidylinositol synthase	-	1e-5	At1g68000	ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1)	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.14043.1.S1_a_at	AY103975.1	enolase1	-	3e-81	At2g36530	LOS2	C.G.	S.X.	Please select
0.01	9e-2	36	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	C.G.	S.X.	Please select
0.01	9e-2	36	Zm.10261.1.S1_at	AY112633.1	-	-	1e-17	At3g47460	ATSMC2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g23340	828433	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	HgAffx.459.1.A1_at	CB378494	-	-	2e-2	At5g59380	MBD6	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	EBem05_SQ002_F23_at	EBem05_SQ002_F23	-	-	6e-2	At4g25190	unknown protein	C.G.	S.X.	Please select
0.11	3e-39	163	Oryza sativa	Os04g0479100	AK071348.1	-	Conserved hypothetical protein	1e+0	At3g55646	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.120665.1.A1_at	CV270116	-	-	3e+0	At4g18740	transcription termination factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-11	69	Triticum aestivum	TaAffx.113122.1.S1_at	CA623812	-	-	4e+0	At5g15960	KIN1	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1619520_at	CB008493	-	-	1e-1	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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