Gene omics information

Query gene ID	Zm.18097.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.18097.1.A1_at	CF635499	-	-	8e-2	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.30	29.8	Zm.17324.1.A1_at	CK347236	lanC-like protein 2	-	9e-7	At1g52920	GPCR (G PROTEIN COUPLED RECEPTOR)	S.X.	H.G.	Please select
0.21	15.5	Zm.2443.1.A1_at	CF632996	hypothetical protein LOC100272920	-	3e+0	At4g19645	-	S.X.	H.G.	Please select
0.17	10.6	Zm.5652.1.A1_at	AI629811	CCT motif family protein	-	7e-2	At3g07650	COL9 (CONSTANS-LIKE 9)	S.X.	H.G.	Please select
0.17	10.6	Zm.8052.2.A1_at	BM348133	-	-	1e-1	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	S.X.	H.G.	Please select
0.16	9.4	Zm.331.1.S1_at	CD964619	ae1 protein	-	1e+0	At1g67865	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.0	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-8	57	Zm.7568.1.A1_at	CF634665	blue copper protein	-	2e+0	At1g22480	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.04	6e-7	54	Zm.8743.1.A1_at	BM347268	blue copper protein	-	1e-1	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	4e-5	48	Zm.8750.1.A1_at	BM336352	-	-	2e-1	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.17187.1.A1_at	CF628725	hypothetical protein LOC100279743	-	5e-1	At5g62140	unknown protein	C.G.	S.X.	Please select
0.04	9e-3	40	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.16518.1.S1_at	AY105889.1	hypothetical protein LOC100277605	-	7e-1	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3878.1.S1_at	CF010456	pectinesterase inhibitor domain containing protein	-	2e+0	At3g02140	TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.18849.1.A1_at	CO528660	-	-	9e-1	At5g37200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.13865.1.S1_at	AF521880.1	R2R3 Myb transcription factor MYB-IF35	-	1e-5	At5g61420	MYB28 (myb domain protein 28)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-2	38	Arabidopsis thaliana	At1g72230	843555	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.C67000061_s_at	PsAffx.C67000061	-	-	8e-1	At5g52200	unknown protein	C.G.	S.X.	Please select
0.36	2e-75	282	Hordeum vulgare	Contig12670_at	Contig12670	-	-	3e-5	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.36	4e-73	276	Oryza sativa	OsAffx.5542.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e+0	32	Populus trichocarpa	PtpAffx.218359.1.S1_at	pmrna33938	hypothetical protein	-	4e+0	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	6e-3	42	Triticum aestivum	TaAffx.85554.1.S1_at	CA621780	-	-	6e-2	At1g29230	CIPK18 (CBL-INTERACTING PROTEIN KINASE 18)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1613505_at	CK138219.1	-	-	6e+0	At5g58900	myb family transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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