Gene omics information

Query gene ID	Zm.18090.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.2	Zm.18090.1.A1_at	AY106351.1	-	-	1e-8	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please select
0.68	86.1	Zm.1968.1.A1_at	CF244101	MGD2	-	1e-20	At2g11810	MGDC	S.X.	H.G.	Please select
0.67	85.8	Zm.11475.1.A1_a_at	BQ539206	hypothetical protein LOC100273223	-	1e-3	At2g45330	emb1067 (embryo defective 1067)	S.X.	H.G.	Please select
0.61	79.5	Zm.7304.1.A1_x_at	BM350347	hypothetical protein LOC100275336	-	3e-1	At1g31335	unknown protein	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.780.1.S1_at	AI746266	-	-	8e-1	At1g08350	endomembrane protein 70 family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.4402.1.A1_at	AW091394	hypothetical protein LOC100193028	-	1e-3	At5g21160	La domain-containing protein / proline-rich family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.9517.1.A1_at	BM269495	-	-	2e+1	Atmg00630	-	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.113.1.A1_at	AI665585	Hypothetical protein LOC100193950	-	3e+0	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	S.X.	H.G.	Please select
0.41	49.7	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	S.X.	H.G.	Please select
0.40	48.5	Zm.13289.1.S1_at	CA826954	-	-	7e-2	At1g22210	trehalose-6-phosphate phosphatase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.3	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.1	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	2169	Zm.18090.1.S1_at	CK986006	golgi SNARE 12 protein	-	1e-8	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.857.1.A1_at	AI770690	-	-	3e+0	At4g23496	SP1L5 (SPIRAL1-LIKE5)	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.857.1.S1_at	AI770690	flavonol 4-sulfotransferase	-	3e+0	At4g23496	SP1L5 (SPIRAL1-LIKE5)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.8153.1.S1_at	BM073105	-	-	3e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8245.1.A1_at	BM073406	salt tolerance-like protein	-	9e+0	At5g14030	translocon-associated protein beta (TRAPB) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.124.1.S1_at	CF058601	dof zinc finger protein MNB1A	-	7e-7	At3g52440	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.10343.1.S1_at	AF443596.1	enhancer of zeste1	-	5e-56	At2g23380	CLF (CURLY LEAF)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.9514.1.A1_at	BM269476	hypothetical protein LOC100279704	-	3e-1	At2g14500	F-box family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9179.1.S1_at	CD998283	hypothetical protein LOC100193993	-	3e-8	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-8	61	Arabidopsis thaliana	At1g15880	838158	GOS11 (golgi snare 11)	Golgi SNARE 11 protein (GOS11)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	9e-10	65	Glycine max	Gma.1413.1.S1_a_at	AW734487	-	-	8e-37	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select
0.52	5e-160	563	Hordeum vulgare	Contig7723_at	Contig7723	-	-	2e+0	At5g55280	FTSZ1-1	C.G.	S.X.	Please select
0.46	9e-131	468	Oryza sativa	Os08g0440000	AK102539.1	-	Vesicle transport v-SNARE family protein	2e-3	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-4	48	Populus trichocarpa	PtpAffx.73007.1.A1_at	CV246599	-	-	2e-16	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	1e-147	523	Triticum aestivum	Ta.24363.1.S1_at	BJ228679	-	-	8e+0	At4g22950	AGL19 (AGAMOUS-LIKE 19)	C.G.	S.X.	Please select
0.12	5e-8	57	Vitis vinifera	1617825_s_at	CF205420.1	-	-	3e-23	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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