Gene omics information

Query gene ID	Zm.18083.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.18083.2.A1_at	CK985909	-	-	1e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.91	99.0	Zm.11655.1.A1_at	BM379701	Grx_C8 - glutaredoxin subgroup III	-	3e-17	At3g02000	ROXY1	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.820.1.S1_at	AI770463	hypothetical protein LOC100217195	-	8e-1	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.71	88.2	Zm.9670.2.A1_a_at	AY110378.1	-	-	4e-4	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	S.X.	H.G.	Please select
0.53	69.1	Zm.127.1.A1_a_at	BM332797	octopine synthase binding factor1	-	1e-8	At5g14760	AO (L-ASPARTATE OXIDASE)	S.X.	H.G.	Please select
0.50	65.7	Zm.11764.1.A1_at	AY109047.1	GIR1 /// GIR1	-	1e+0	At5g62210	embryo-specific protein-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.1	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.7	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.5	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.1	96.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.2	96.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	7e-74	276	Zm.18083.1.A1_a_at	BU079763	-	-	1e-17	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.33	7e-74	276	Zm.18083.1.A1_at	BU079763	-	-	1e-17	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.7674.1.A1_at	BM268596	hypothetical protein LOC100273721	-	1e-19	At5g19920	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.17516.1.S1_at	CF623514	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2957.1.A1_at	CK371564	-	-	5e-12	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.12073.1.S1_at	CF004248	hypothetical protein LOC100276174	-	4e+0	At5g57500	transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.9539.1.A1_at	AY105652.1	-	-	7e-8	At3g14205	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.6703.1.A1_at	CA398710	hypothetical protein LOC100273224	-	1e+0	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.5476.2.S1_at	CF016143	IQ calmodulin-binding motif family protein	-	2e-1	At1g29060	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-12	73	Arabidopsis thaliana	At2g38670	818449	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.56432.1.S1_at	AI794727	-	-	3e+0	At1g15370	-	C.G.	S.X.	Please select
0.22	2e-31	135	Hordeum vulgare	Contig13814_at	Contig13814	-	-	6e-13	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.27	6e-44	178	Oryza sativa	Os12g0121300	BU673036	-	-	2e-5	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.64380.1.A1_at	CV271019	-	-	2e-1	At1g11750	CLPP6	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-26	119	Triticum aestivum	Ta.16117.1.S1_at	BJ306437	-	-	3e-4	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.13	3e-4	44	Vitis vinifera	1609775_at	BQ797173	similar to Os11g0123400	-	8e-18	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage