Gene omics information

Query gene ID	Zm.18044.1.A1_at
Gene name	RNA polymerase II largest subunit
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.18044.1.A1_at	AF519538.1	RNA polymerase II largest subunit	-	2e-123	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	S.X.	H.G.	Please select
0.73	89.9	Zm.15394.1.S1_at	BM268179	hypothetical protein LOC100194032 /// adhesive/proline-rich protein /// adhesive/proline-rich protein	-	5e+0	At4g08730	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.8970.1.A1_at	CO527395	hypothetical protein LOC100193936	-	5e-1	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	S.X.	H.G.	Please select
0.61	79.5	Zm.35.1.S1_x_at	AY434688.1	-	-	5e-1	At4g33690	unknown protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.401.1.S1_at	AI676829	-	-	2e-1	At5g46030	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.6732.1.S1_s_at	AF440221.1	HMG-like nucleosome/chromatin assembly factor D	-	3e-11	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.9	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.2	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.4	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.2	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	4357	Zm.18044.1.S1_at	AF519538.1	RNA polymerase II largest subunit	-	2e-123	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.5277.1.A1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.5277.1.S1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.5522.1.A1_at	AI622432	hypothetical protein LOC100272415	-	1e+0	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.5029.1.A1_at	AY109139.1	hypothetical protein LOC100272501	-	2e+0	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.456.1.S1_at	AF019145.2	maize insect resistance1	-	5e-2	At4g11320	cysteine proteinase, putative	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.3979.1.S1_at	AY106386.1	hypothetical protein LOC100273391	-	7e-13	At3g22845	emp24/gp25L/p24 protein-related	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.2755.1.A1_at	AW067098	target of rapamycin	-	7e-31	At1g50030	TOR (TARGET OF RAPAMYCIN)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.2376.3.S1_a_at	BG873775	ADP-ribosylation factor GTPase-activating protein 3	-	7e-20	At2g35210	RPA (ROOT AND POLLEN ARFGAP)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-123	444	Arabidopsis thaliana	At4g35800	829734	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	6e-1	38	Glycine max	GmaAffx.90836.1.S1_at	CF806561	-	-	1e+0	Atmg00840	-	C.G.	S.X.	Please select
0.01	3e+0	34	Hordeum vulgare	Contig16043_at	Contig16043	-	-	1e-7	At3g27120	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select
0.44	0	2274	Oryza sativa	OsAffx.18625.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	1e-116	422	Populus trichocarpa	PtpAffx.225664.1.S1_at	pmrna45174	-	-	2e-174	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-18	93	Triticum aestivum	TaAffx.51117.1.S1_at	CA730838	-	-	1e-24	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select
0.02	8e-3	42	Vitis vinifera	1616848_at	CF511470	hypothetical protein LOC100250406	-	1e+0	At1g24575	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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