Gene omics information

Query gene ID	Zm.18000.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.18000.1.A1_at	CK827977	-	-	6e+0	At4g31730	GDU1 (GLUTAMINE DUMPER 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.13188.1.A1_at	AY103625.1	Hypothetical protein LOC100193556	-	5e-32	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	S.X.	H.G.	Please select
0.44	55.7	Zm.9456.1.A1_at	BM341648	hypothetical protein LOC100191738	-	5e+0	At4g28020	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.17731.1.S1_at	CK370453	-	-	2e+0	At5g51760	AHG1 (ABA-hypersensitive germination 1)	S.X.	H.G.	Please select
0.16	9.4	Zm.1801.1.S1_at	AY105163.1	hypothetical protein LOC100193039	-	2e-1	At5g46780	VQ motif-containing protein	S.X.	H.G.	Please select
0.08	3.4	Zm.17534.1.S1_x_at	CK369298	hypothetical protein LOC100192824 /// hypothetical protein LOC100192825	-	2e+0	At5g36710	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-4	44	Zm.17931.1.A1_at	CK827676	hydrogen-transporting ATP synthase, rotational mechanism	-	5e+0	At4g34265	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.4037.2.A1_at	CF631049	hypothetical protein LOC100272959 /// receptor-like protein kinase RK20-1	-	3e-2	At4g05200	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.3077.1.A1_at	CF637365	calmodulin	-	4e-82	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.3077.1.A1_a_at	CF637365	calmodulin	-	4e-82	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.17661.1.A1_at	CK369350	-	-	1e+0	At5g61410	RPE	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.17689.1.S1_at	CK370194	-	-	3e+0	At1g63055	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.17184.1.A1_at	CK985542	hypothetical protein LOC100275893	-	6e+0	At4g09984	LCR34 (Low-molecular-weight cysteine-rich 34)	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.8130.1.A1_at	CK369071	hypothetical protein LOC100277641	-	1e+0	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At4g31730	829301	GDU1 (GLUTAMINE DUMPER 1)	Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	8e-6	52	Glycine max	PsAffx.CL97Contig1_at	PsAffx.CL97Contig1	-	-	3e-35	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.04	2e-1	36	Hordeum vulgare	Contig1321_at	Contig1321	-	-	3e-88	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.51	5e-45	182	Oryza sativa	Os05g0491000	AK105230.1	-	Calcium-binding EF-hand domain containing protein	1e+0	At3g47510	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.220125.1.S1_at	pmrna36466	hypothetical protein	-	3e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	4e-47	188	Triticum aestivum	TaAffx.112339.1.S1_at	CA624778	-	-	1e+1	At5g60490	FLA12	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620092_at	CB340912	hypothetical LOC100246138	-	2e-1	At2g25000	WRKY60	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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