Gene omics information

Query gene ID	Zm.17956.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	96.4	Zm.17956.1.A1_at	CF637428	-	-	2e+0	At3g20570	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.59	76.1	Zm.5792.2.A1_at	AY106767.1	-	-	1e+0	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	S.X.	H.G.	Please select
0.55	71.6	Zm.1685.1.A1_at	CF059093	hypothetical protein LOC100192950	-	6e-3	At3g18060	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.52	67.3	Zm.2321.6.A1_at	AI677502	hypothetical protein LOC100277354	-	3e-3	At3g28970	AAR3 (antiauxin-resistant 3)	S.X.	H.G.	Please select
0.51	66.4	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.10790.1.S1_at	AY106615.1	glutamyl-tRNA reductase1 /// hypothetical protein LOC100191548	-	4e-6	At1g58290	HEMA1	S.X.	H.G.	Please select
0.50	65.7	Zm.11977.1.A1_at	BM382289	-	-	2e+1	At5g20650	COPT5	S.X.	H.G.	Please select
0.50	65.7	Zm.13744.1.S1_at	AY106035.1	guanine nucleotide-binding protein alpha-1 subunit	-	2e-14	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.245.1.S1_at	AY108063.1	glutathione transferase6	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	S.X.	H.G.	Please select
0.49	61.9	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.5	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
9.7	98.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-18	91	Zm.8626.1.A1_at	BM348921	hypothetical protein LOC100274398	-	1e+0	At5g61600	ethylene-responsive element-binding family protein	C.G.	S.X.	Please select
0.14	8e-13	73	Zm.18520.1.A1_at	CF632042	-	-	8e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.13	7e-10	63	Zm.7459.1.A1_at	AY105544.1	Hypothetical protein LOC100193143	-	6e-1	At2g44790	UCC2 (UCLACYANIN 2)	C.G.	S.X.	Please select
0.12	5e-8	57	Zm.11441.1.S1_at	AY672654.1	ethylene-responsive factor-like protein 1	-	2e+0	At3g14230	RAP2.2	C.G.	S.X.	Please select
0.11	2e-7	56	Zm.12317.1.S1_at	AY106969.1	ethylene-responsive transcription factor 4	-	2e-12	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.05	4e-5	48	Zm.10842.1.S1_a_at	AF493800.1	DRE binding factor 1	-	1e-4	At2g22200	AP2 domain-containing transcription factor	C.G.	S.X.	Please select
0.02	2e-4	46	Zm.7765.1.A1_at	BQ539662	-	-	3e-1	At1g53170	ERF8	C.G.	S.X.	Please select
0.02	2e-4	46	Zm.17227.1.S1_at	CA405282	hypothetical protein LOC100272437	-	6e-2	At1g49740	phospholipase C/ phosphoric diester hydrolase	C.G.	S.X.	Please select
0.04	7e-4	44	Zm.13383.1.S1_at	AY178191.1	branched silkless1	-	1e-2	At1g53170	ERF8	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g20570	821604	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	4e-8	59	Glycine max	Gma.5293.2.S1_at	CD415914	-	-	2e-3	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.18	3e-28	125	Hordeum vulgare	Contig17873_at	Contig17873	-	-	4e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please select
0.28	8e-41	169	Oryza sativa	Os10g0562900	AY341826.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	6e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	4e-5	50	Populus trichocarpa	PtpAffx.152047.1.S1_s_at	BU862560	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	2e-12	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	1e-13	77	Triticum aestivum	Ta.16395.1.S1_at	CA605617	-	-	7e+0	At1g43160	RAP2.6 (related to AP2 6)	C.G.	S.X.	Please select
0.08	7e-3	40	Vitis vinifera	1618661_s_at	CF518549	hypothetical protein LOC100254504	-	1e-1	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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