Gene omics information

Query gene ID	Zm.17942.1.A1_at
Gene name	hypothetical protein LOC100192912
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.17942.1.A1_at	CK827838	hypothetical protein LOC100192912	-	1e-7	At5g65780	ATBCAT-5	S.X.	H.G.	Please select
0.56	74.4	Zm.10803.1.S1_at	BQ577732	desiccation-associated protein	-	4e-5	At4g04900	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	S.X.	H.G.	Please select
0.48	61.3	Zm.2378.1.A1_at	BQ485596	-	-	8e-10	At1g70750	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	S.X.	H.G.	Please select
0.48	61.3	Zm.5599.1.A1_at	CF649483	O-methyltransferase ZRP4	-	7e-1	At1g51990	O-methyltransferase family 2 protein	S.X.	H.G.	Please select
0.44	55.7	Zm.18045.1.A1_at	BM080270	-	-	8e-4	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.43	52.8	Zm.1305.1.S1_at	AF034945.1	glycine-rich RNA binding protein	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	S.X.	H.G.	Please select
0.41	49.7	Zm.18124.1.S1_at	AY104334.1	hypothetical protein LOC100275630	-	1e+0	At1g32560	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	S.X.	H.G.	Please select
0.41	49.7	Zm.6453.1.S1_at	AY106427.1	-	-	3e-1	At5g33390	glycine-rich protein	S.X.	H.G.	Please select
0.39	45.6	Zm.5609.1.A1_at	CF632012	COP9 signalosome complex subunit 3	-	1e-1	At1g20816	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	97.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.5	97.1	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.9	95.7	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-49	194	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.08	6e-1	34	Zm.10540.2.A1_a_at	BQ538200	branched-chain-amino-acid aminotransferase	-	1e+0	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.4560.2.A1_a_at	AY106577.1	hypothetical protein LOC100273536	-	2e-11	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.4560.2.A1_at	AY106577.1	hypothetical protein LOC100273536	-	2e-11	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.14138.1.A1_at	U75531.1	hypothetical protein LOC100274046	-	2e-1	At3g21270	ADOF2	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13670.1.A1_at	AY107037.1	hypothetical protein LOC100276497	-	3e-3	At5g34930	arogenate dehydrogenase	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13188.2.S1_a_at	CF011864	hypothetical protein LOC100193240	-	1e-51	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13188.2.S1_x_at	CF011864	hypothetical protein LOC100193240	-	1e-51	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-7	57	Arabidopsis thaliana	At5g65780	836707	ATBCAT-5	encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	5e-4	46	Glycine max	GmaAffx.49521.1.S1_at	AW348568	-	-	1e-19	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.37	2e-66	252	Hordeum vulgare	Contig20424_at	Contig20424	-	-	2e-12	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.30	1e-54	214	Oryza sativa	Os05g0558400	AK072756.1	-	Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)	5e-24	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	5e-4	46	Populus trichocarpa	PtpAffx.202001.1.S1_at	pmrna3992	hypothetical protein	-	7e-10	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	1e-41	171	Triticum aestivum	TaAffx.129158.2.A1_at	CA736250	-	-	1e+0	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.05	5e-4	44	Vitis vinifera	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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