Gene omics information

Query gene ID	Zm.17939.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.17939.1.A1_at	CK369011	-	-	4e-1	At1g27290	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.10332.1.A1_a_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.6390.1.S1_at	BU098381	hypothetical protein LOC100277409	-	8e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.7094.2.S1_at	CA403709	60S ribosomal protein L7a	-	3e-80	At3g62870	60S ribosomal protein L7A (RPL7aB)	S.X.	H.G.	Please select
0.23	18.6	Zm.8470.1.S1_at	AF493561.1	sucrose-phosphatase	-	4e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	S.X.	H.G.	Please select
0.16	9.4	Zm.9191.1.A1_at	BM350157	hypothetical protein LOC100279424	-	6e-4	At4g40100	ABA-responsive protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.5	97.8	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.2	97.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
2.4	92.2	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.3	91.7	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.3	91.7	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	9e-170	595	Zm.14077.2.A1_at	AY104520.1	-	-	5e+0	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.03	2e-4	46	Zm.17639.1.S1_at	CK368504	-	-	5e+0	At3g04830	binding	C.G.	S.X.	Please select
0.03	7e-4	44	Zm.3751.1.A1_at	AW330700	serine esterase family protein	-	2e+0	At4g05230	ubiquitin family protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.3831.1.S1_at	CF627002	hypothetical protein LOC100274341	-	7e-6	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.19191.1.A1_at	AY106439.1	-	-	5e-1	At3g46510	PUB13 (PLANT U-BOX 13)	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.17772.1.S1_at	CK371641	-	-	6e-2	At4g28170	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.17723.1.S1_at	CK370226	-	-	5e+0	At1g80780	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.17119.1.S1_at	AY106624.1	peroxidase 1	-	9e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	C.G.	S.X.	Please select
0.05	3e-3	42	Zm.14270.3.S1_at	CK368888	Hypothetical protein LOC100216603	-	3e-1	At5g66980	transcriptional factor B3 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At1g27290	839618	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.4530.1.S1_at	BI317212	-	-	9e-1	At2g22941	-	C.G.	S.X.	Please select
0.17	9e-47	186	Hordeum vulgare	Contig5723_at	Contig5723	-	-	5e-3	At3g15170	CUC1 (CUP-SHAPED COTYLEDON1)	C.G.	S.X.	Please select
0.26	3e-53	210	Oryza sativa	Os08g0562200	AK099629.1	-	No apical meristem (NAM) protein domain containingprotein	2e-2	At5g04410	NAC2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e-1	36	Populus trichocarpa	PtpAffx.209101.1.S1_at	pmrna18005	hypothetical protein	-	3e-1	At4g39720	VQ motif-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	7e-37	155	Triticum aestivum	Ta.9136.1.S1_at	CK200225	-	-	3e-1	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1608801_at	CF414687	-	-	2e+0	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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