Gene omics information

Query gene ID	Zm.17843.2.A1_at
Gene name	hypothetical protein LOC100216964
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.51	66.4	Zm.17843.2.A1_at	CD999046	hypothetical protein LOC100216964	-	6e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	S.X.	H.G.	Please select
0.69	86.5	Zm.18352.1.S1_at	CO527044	glucan endo-1,3-beta-glucosidase, acidic isoform	-	1e+1	At5g62470	MYB96 (myb domain protein 96)	S.X.	H.G.	Please select
0.67	85.8	Zm.13250.1.S1_at	CN844210	Zea mays MADS14	-	3e-2	At2g03710	SEP4 (SEPALLATA 4)	S.X.	H.G.	Please select
0.57	75.1	Zm.7397.1.A1_at	BQ539216	hypothetical protein LOC100277233	-	5e-4	At3g05550	hypoxia-responsive family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.7826.2.A1_at	AY107684.1	-	-	5e+0	At4g22517	-	S.X.	H.G.	Please select
0.54	69.8	Zm.18351.1.S1_at	CO529439	-	-	2e+0	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please select
0.48	61.3	Zm.13016.1.A1_at	CA403346	hypothetical protein LOC100277160	-	2e+0	At1g22160	senescence-associated protein-related	S.X.	H.G.	Please select
0.47	59.9	Zm.12958.1.A1_at	CA402421	hypothetical protein LOC100217276	-	9e+0	At5g43245	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.6606.1.A1_at	AI467702	hypothetical protein LOC100272956	-	8e-7	At3g53500	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.7	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	Zm.14330.1.A1_at	AI712010	hypothetical protein LOC100279866	-	9e-10	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6490.1.A1_at	AY108673.1	hypothetical protein LOC100193949	-	4e-2	At1g55750	transcription factor-related	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5653.1.A1_at	BM074926	-	-	1e-34	At2g37680	-	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.437.1.A1_a_at	AF007580.1	translation initiation factor	-	7e-162	At1g54270	EIF4A-2	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.4216.1.A1_at	AW066666	peptidyl-prolyl isomerase PASTICCINO1	-	2e-9	At3g54010	PAS1 (PASTICCINO 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.3821.1.A1_at	CF635078	-	-	1e+0	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.3313.1.A1_a_at	CK985862	-	-	6e+0	At5g25840	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.3313.1.A1_x_at	CK985862	-	-	6e+0	At5g25840	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.3015.1.S2_at	AW066558	hypothetical protein LOC100272395	-	2e-154	At1g54270	EIF4A-2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At2g47910	819403	CRR6 (chlororespiratory reduction 6)	Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	GmaAffx.52285.1.A1_at	CD403457	-	-	6e-1	At5g64830	programmed cell death 2 C-terminal domain-containing protein	C.G.	S.X.	Please select
0.17	2e-23	109	Hordeum vulgare	Contig7322_at	Contig7322	-	-	2e-3	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select
0.14	1e-9	65	Oryza sativa	Os04g0485200	AK069013.1	-	UBX domain containing protein	1e-2	At2g18530	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.57294.1.A1_at	CV231857	hypothetical protein	-	9e-1	At5g40645	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-25	117	Triticum aestivum	Ta.7627.1.S1_at	CK207218	-	-	2e-1	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1613472_at	CD801500	hypothetical protein LOC100249155	-	2e-10	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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