CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.17818.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.17818.1.A1_at CK145213 - - 6e+0 At5g52470 FIB1 (FIBRILLARIN 1) S.X. H.G.
0.67 85.8 ZmAffx.1142.1.A1_at AW399873 - - 2e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative S.X. H.G.
0.61 79.5 Zm.7830.1.S1_at BM080060 nucleic acid binding protein - 4e-1 At2g03190 ASK16 (ARABIDOPSIS SKP1-LIKE 16) S.X. H.G.
0.53 69.1 Zm.7016.1.A1_at AY103859.1 - - 3e-1 At5g44610 MAP18 (Microtubule-associated Protein 18) S.X. H.G.
0.40 48.5 ZmAffx.751.1.A1_at AI745874 - - 1e+1 At5g44990 - S.X. H.G.
0.22 16.9 Zm.1094.1.A1_at BM339500 - - 2e-5 At5g26210 AL4 (ALFIN-LIKE 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.5 98.9 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
12.2 98.6 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
7.6 97.9 GSM253268 ZM_4.5d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
6.9 97.7 GSM253262 ZM_4d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
6.7 97.6 GSM253258 ZM_2d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
6.3 97.4 GSM253257 ZM_2d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
6.0 97.3 GSM253256 ZM_2d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Zm.7091.2.A1_at AY103838.1 Chlorophyll a/b-binding apoprotein CP24 precursor - 2e-15 At1g15820 LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6) C.G. S.X.
0.02 2e-1 36 Zm.7091.1.A1_at U23190.1 Chlorophyll a/b-binding apoprotein CP24 precursor - 3e-15 At1g15820 LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6) C.G. S.X.
0.02 2e-1 36 Zm.7091.1.A1_x_at U23190.1 chlorophyll a/b-binding apoprotein CP24 precursor - 3e-15 At1g15820 LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6) C.G. S.X.
0.02 2e-1 36 Zm.7091.2.S1_a_at AY103838.1 chlorophyll a/b-binding apoprotein CP24 precursor - 2e-15 At1g15820 LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6) C.G. S.X.
0.02 2e-1 36 Zm.17215.1.A1_at CO523350 RING zinc finger protein-like - 2e+0 At5g51440 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) C.G. S.X.
0.01 7e-1 34 Zm.7665.1.A1_at CF634198 - - 5e-2 At4g30160 VLN4 (ARABIDOPSIS THALIANA VILLIN 4) C.G. S.X.
0.01 7e-1 34 Zm.7665.1.S1_at AY108375.1 - - 2e-1 At3g13782 NAP1 C.G. S.X.
0.02 7e-1 34 Zm.6066.1.A1_at CF635836 - - 2e-1 At1g30690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.02 7e-1 34 Zm.4123.1.S1_at AI973339 hypothetical protein LOC100272971 - 6e+0 At5g52750 heavy-metal-associated domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 32 Arabidopsis thaliana At5g52470 835323 FIB1 (FIBRILLARIN 1) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. - - - C.G. S.X.
0.09 2e-4 48 Glycine max GmaAffx.20258.1.S1_at CA937564 - - 9e-4 At1g26220 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HA09n12r_at HA09n12r - - 2e-1 At3g43850 unknown protein C.G. S.X.
0.42 3e-74 280 Oryza sativa Os08g0102000 AK068156.1 - GCN5-related N-acetyltransferase domain containingprotein 2e+0 At4g01883 - C.G. S.X.
0.03 1e-1 38 Populus trichocarpa Ptp.304.1.A1_at CK088212 dehydroquinate dehydratase/ shikimate dehydrogenase - 3e+0 At2g04530 CPZ C.G. S.X.
0.46 2e-120 432 Triticum aestivum Ta.17878.1.S1_at CK215268 - - 3e-2 At5g08480 VQ motif-containing protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614710_at CF404864 - - 1e-1 At1g53625 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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