Gene omics information

Query gene ID	Zm.17816.2.S1_a_at
Gene name	tRNA pseudouridine synthase family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.1738.1.S1_at	AF034947.1	inorganic pyrophosphatase	-	3e-40	At4g01480	AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5)	S.X.	H.G.	Please select
0.60	77.8	Zm.9674.1.A1_at	BM350297	-	-	4e-7	At5g13080	WRKY75	S.X.	H.G.	Please select
0.60	77.8	Zm.18392.1.A1_at	CO533252	-	-	7e+0	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.10079.1.A1_a_at	CK370542	hypothetical protein LOC100193809	-	2e-3	At4g32480	unknown protein	S.X.	H.G.	Please select
0.35	38.9	Zm.13938.2.S1_at	CK368471	-	-	4e-23	At2g19740	60S ribosomal protein L31 (RPL31A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.0	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1312	Zm.17816.2.S1_x_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please select
1.00	0	1312	Zm.17816.2.A1_at	CK144883	-	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please select
0.22	5e-106	383	Zm.17816.1.S1_at	BM073949	tRNA pseudouridine synthase family protein	-	1e-9	At1g76120	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.9914.1.A1_at	BM381326	hypothetical protein LOC100191176	-	3e+0	At5g54400	methyltransferase	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.1489.1.A1_at	CO519381	1-aminocyclopropane-1-carboxylate oxidase 1	-	5e-8	At1g05010	EFE (ETHYLENE-FORMING ENZYME)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.12077.1.A1_at	BM379970	hypothetical protein LOC100193845	-	2e+0	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.10313.1.S1_at	AY082396.1	knotted1-interacting protein	-	2e-7	At2g16400	BLH7 (bell1-like homeodomain 7)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.7780.1.A1_at	CD433445	hypothetical protein LOC100274595	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.7780.1.S1_at	CD433445	-	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Arabidopsis thaliana	At1g76120	843944	tRNA pseudouridine synthase family protein	F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.19318.1.S1_at	BQ094677	-	-	6e-5	At3g52060	unknown protein	C.G.	S.X.	Please select
0.30	6e-112	402	Hordeum vulgare	Contig10885_at	Contig10885	-	-	3e-7	At1g20370	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please select
0.34	9e-139	494	Oryza sativa	Os02g0668400	9630.m04338	-	ab initio prediction with EST support	4e-6	At1g20370	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.220654.1.S1_at	pmrna37064	-	-	8e+0	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-2	38	Triticum aestivum	Ta.24513.1.S1_x_at	CA703977	-	-	5e+0	At3g01010	UDP-glucose/GDP-mannose dehydrogenase family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1606985_at	CF607458	hypothetical protein LOC100246852	-	3e-1	At2g17230	EXL5 (EXORDIUM LIKE 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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