Gene omics information

Query gene ID	Zm.1780.1.A1_at
Gene name	hypothetical protein LOC100274241
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.1780.1.A1_at	CF629323	hypothetical protein LOC100274241	-	4e-2	At5g09400	KUP7	S.X.	H.G.	Please select
0.80	94.0	Zm.6410.1.A1_at	AI691946	-	-	2e+0	At3g15630	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.16308.1.S1_s_at	CF015021	hypothetical protein LOC100191269	-	8e-4	At4g34660	SH3 domain-containing protein 2 (SH3P2)	S.X.	H.G.	Please select
0.57	75.1	Zm.16704.1.A1_at	AI738374	-	-	3e-10	Atmg01130	-	S.X.	H.G.	Please select
0.31	31.6	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	S.X.	H.G.	Please select
0.22	16.9	Zm.12848.1.A1_at	AW037142	hypothetical protein LOC100273763	-	5e-1	At1g18780	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	97.6	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.5	97.5	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.1	97.4	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.9	97.3	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.7	97.2	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.2	96.9	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.2	96.9	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.1	96.8	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.7	96.5	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.7	96.5	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-3	44	ZmAffx.521.1.A1_at	AI711634	hypothetical protein LOC100193955	-	3e+0	At5g27880	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.05	1e-3	44	ZmAffx.521.1.S1_at	AI711634	Hypothetical protein LOC100193955	-	3e+0	At5g27880	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.1668.1.A1_at	CF637028	hypothetical protein LOC100193513	-	2e-3	At2g25740	ATP-dependent protease La (LON) domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.542.1.S1_at	AF244676.1	glutathione transferase11	-	3e+0	At5g19473	-	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.14617.1.A1_at	BM080453	Hypothetical protein LOC100191188	-	2e+0	At2g33130	RALFL18 (ralf-like 18)	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.15.1.A1_at	AI491598	hypothetical protein LOC100279806 /// hypothetical protein LOC100280386	-	7e+0	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.15.1.S1_at	AI491598	-	-	7e+0	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7599.1.A1_at	BM079109	-	-	5e-4	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.3181.1.A1_at	CK347136	COP9 signalosome complex subunit 6a	-	8e-35	At5g56280	CSN6A	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-2	40	Arabidopsis thaliana	At5g09400	830799	KUP7	potassium transporter	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	5e-8	59	Glycine max	Gma.2816.2.S1_at	BI701000	-	-	1e-10	At4g33530	KUP5	C.G.	S.X.	Please select
0.38	2e-54	212	Hordeum vulgare	Contig15800_at	Contig15800	-	-	9e+0	Atmg00070	-	C.G.	S.X.	Please select
0.29	1e-148	527	Oryza sativa	Os04g0610700	AK100672.1	-	Potassium transporter 13 (AtPOT13) (AtKT5)	1e-10	At5g09400	KUP7	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-9	63	Populus trichocarpa	PtpAffx.200590.1.S1_at	pmrna1168	hypothetical protein	-	2e-30	At4g33530	KUP5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	4e-11	69	Triticum aestivum	Ta.23227.3.S1_s_at	CA739462	-	-	2e+0	At2g11910	unknown protein	C.G.	S.X.	Please select
0.07	7e-7	54	Vitis vinifera	1619845_at	CB918038	hypothetical protein LOC100252548	-	4e-19	At4g33530	KUP5	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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