Gene omics information

Query gene ID	Zm.1779.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.1779.1.A1_at	CF020941	-	-	1e+1	At5g64020	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2020.1.A1_at	AY105938.1	hypothetical protein LOC100274480	-	1e-4	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.592.1.S1_at	AI715020	-	-	1e+1	At3g12300	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.15490.1.A1_at	CD448845	subtilisin-chymotrypsin inhibitor CI-1B	-	4e+0	At5g38930	germin-like protein, putative	S.X.	H.G.	Please select
0.57	75.1	Zm.14760.1.A1_at	AY104289.1	Ubiquitin-conjugating enzyme E2	-	2e+0	At2g13980	nucleic acid binding	S.X.	H.G.	Please select
0.50	65.7	Zm.16805.6.S1_x_at	BG320419	ADP-ribosylation factor 1	-	2e-99	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
17.3	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
15.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	Zm.5901.1.A1_at	BG841111	hypothetical protein LOC100191848	-	4e-39	At5g47200	ATRAB1A	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.4144.1.S1_at	AY104561.1	-	-	5e-1	At1g62421	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.367.1.S1_at	D26563.1	low temperature-induced protein15	-	2e-4	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.2051.1.A1_at	CF629902	-	-	5e-12	At5g17530	phosphoglucosamine mutase family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.1222.1.A1_at	BM351802	-	-	6e-2	At3g22440	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9659.1.A1_at	BM350799	-	-	4e-1	At1g69510	-	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8761.1.A1_s_at	BM269347	-	-	4e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6522.2.A1_at	AY108423.1	hypothetical protein LOC100216568	-	2e-4	At1g52870	peroxisomal membrane protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	30	Arabidopsis thaliana	At5g64020	836523	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.5976.1.A1_at	BU548423	-	-	4e+0	At4g23496	SP1L5 (SPIRAL1-LIKE5)	C.G.	S.X.	Please select
0.13	1e-4	46	Hordeum vulgare	Contig14065_at	Contig14065	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.06	4e-1	36	Oryza sativa	Os12g0425600	AK105475.1	-	Hypothetical plant protein family protein	3e-7	At1g04910	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.202753.1.S1_at	pmrna5492	hypothetical protein	-	9e-9	At1g19400	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	Ta.13594.2.S1_at	BQ804162	-	-	7e-24	At5g18230	transcription regulator NOT2/NOT3/NOT5 family protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1618287_at	CD802116	hypothetical protein LOC100241989	-	7e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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