Gene omics information

Query gene ID	Zm.17778.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.17778.1.S1_at	CK370487	-	-	1e-3	At1g77020	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.465.1.A1_at	AI677343	DTW domain containing protein	-	8e-1	At1g02450	NIMIN1 (NIM1-INTERACTING 1)	S.X.	H.G.	Please select
0.38	44.2	Zm.15646.1.A1_at	BM074559	-	-	3e-1	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please select
0.30	29.8	Zm.10167.1.A1_at	BM381529	hypothetical protein LOC100274618 /// hypothetical protein LOC100275328	-	3e-1	At1g58420	-	S.X.	H.G.	Please select
0.29	28.1	Zm.4658.1.A1_at	CK849974	-	-	3e-1	At2g10970	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.17	10.6	Zm.12912.1.A1_at	AW067051	jasmonate-induced protein	-	6e-1	At3g03490	PEX19-1 (peroxin 19-1)	S.X.	H.G.	Please select
0.15	8.6	Zm.4127.1.A1_at	AI855047	hypothetical protein LOC100216901	-	4e+0	At4g11980	ATNUDX14 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.6	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
47.0	100.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
45.5	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-13	75	Zm.3447.1.A1_at	BM379914	acid phosphatase/vanadium-dependent haloperoxidase related	-	2e+0	At5g26130	-	C.G.	S.X.	Please select
0.04	6e-4	44	Zm.17724.3.S1_a_at	CK370253	-	-	2e-1	At1g04985	unknown protein	C.G.	S.X.	Please select
0.04	6e-4	44	Zm.17724.3.S1_x_at	CK370253	-	-	2e-1	At1g04985	unknown protein	C.G.	S.X.	Please select
0.04	6e-4	44	Zm.17724.3.S1_at	CK370253	-	-	2e-1	At1g04985	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.9840.1.A1_at	CK826945	-	-	1e-1	At1g08500	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.4164.2.A1_at	CF627018	-	-	6e+0	At4g19640	ARA7	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.17765.1.S1_at	CK371533	-	-	1e+0	At2g25280	-	C.G.	S.X.	Please select
0.03	9e-3	40	Zm.4666.1.A1_at	CK368897	LSM7-like	-	2e+0	At5g23290	PDF5 (PREFOLDIN 5)	C.G.	S.X.	Please select
0.02	9e-3	40	Zm.19085.1.S1_at	CO533786	hypothetical protein LOC100194351	-	1e-5	At2g21600	ATRER1B	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-3	44	Arabidopsis thaliana	At1g77020	844038	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	Gma.5771.1.S1_at	BM523437	-	-	3e+0	At3g44935	unknown protein	C.G.	S.X.	Please select
0.07	4e-11	67	Hordeum vulgare	Contig17682_at	Contig17682	-	-	8e+0	At5g20020	RAN2	C.G.	S.X.	Please select
0.07	2e-13	77	Oryza sativa	Os02g0555700	AK108057.1	-	Chaperone protein dnaJ (40 kDa heat shockchaperone protein) (HSP40)	6e-5	At1g77020	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.12266.1.A1_at	CV233801	-	-	7e-1	At4g18692	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-8	59	Triticum aestivum	Ta.5554.1.S1_at	BJ285326	-	-	3e-3	At1g77020	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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