Gene omics information

Query gene ID	Zm.17776.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.17776.1.S1_at	CK370381	-	-	1e+0	At5g28030	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.18100.4.A1_at	CD999582	ACT domain containing protein	-	4e-2	At5g04740	ACT domain-containing protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.211.1.S1_at	AI670219	-	-	1e+1	At5g66430	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.13029.1.A1_at	CA400580	-	-	2e+0	At4g32840	PFK6 (PHOSPHOFRUCTOKINASE 6)	S.X.	H.G.	Please select
0.15	8.6	Zm.5083.2.S1_at	AY109962.1	-	-	1e-22	At5g22060	ATJ2	S.X.	H.G.	Please select
0.06	2.3	Zm.12617.1.S1_at	CD441264	-	-	1e+0	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-4	44	Zm.17751.1.S1_at	CK371154	-	-	1e+0	At1g14210	ribonuclease T2 family protein	C.G.	S.X.	Please select
0.04	5e-4	44	Zm.17311.1.S1_at	CK369090	hypothetical protein LOC100275390	-	1e+0	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	C.G.	S.X.	Please select
0.04	5e-4	44	Zm.17166.1.A1_at	CK370745	-	-	4e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.3644.1.S1_at	CO525387	hypothetical protein AY111178 /// hypothetical protein LOC100191318 /// hypothetical protein LOC100217011	-	8e-1	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.19307.1.S1_at	BM337427	-	-	6e+0	At5g58730	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.17981.1.A1_at	CK827727	hypothetical protein LOC100277738	-	5e+0	At2g47520	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.17627.1.A1_at	CK369147	hypothetical protein LOC100272868	-	3e-1	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.17564.1.S1_at	CK369792	AGG2	-	2e+0	At1g68585	unknown protein	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.6024.1.A1_at	AW066865	-	-	2e+0	At5g18500	protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g28030	832873	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.16348.1.S1_at	AW278007	-	-	1e+1	At4g24026	unknown protein	C.G.	S.X.	Please select
0.29	2e-40	165	Hordeum vulgare	Contig20663_at	Contig20663	-	-	5e-1	Atmg01310	-	C.G.	S.X.	Please select
0.11	2e-16	87	Oryza sativa	Os05g0159200	AK067837.1	-	Lipolytic enzyme, G-D-S-L family protein	2e-4	At2g27360	lipase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.221279.1.S1_at	pmrna38048	hypothetical protein	-	1e-2	At5g58660	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	2e-15	83	Triticum aestivum	TaAffx.110781.1.S1_at	CA654501	-	-	3e+0	At5g47450	AtTIP2	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1611648_at	CD718429	-	-	5e+0	At3g05540	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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