Gene omics information

Query gene ID	Zm.17775.1.S1_at
Gene name	50S ribosomal protein L12-2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.17775.1.S1_at	CF627602	50S ribosomal protein L12-2	-	5e+0	At4g14358	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.932.1.A1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.932.1.S1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.17378.2.A1_x_at	CK985826	hypothetical protein LOC100191222	-	2e-16	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	S.X.	H.G.	Please select
0.38	44.2	Zm.17591.2.S1_at	CK347917	-	-	2e-52	At1g14670	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.22	16.9	Zm.15379.1.A1_at	BG842487	-	-	5e+0	At2g30424	TCL2 (TRICHOMELESS 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.0	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.4	96.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8	95.5	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.4	94.9	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-8	57	Zm.18360.1.S1_at	CF048305	hypothetical protein LOC100192505	-	2e+0	At2g03130	ribosomal protein L12 family protein	C.G.	S.X.	Please select
0.02	8e-3	40	Zm.8958.1.A1_at	CK370494	hypothetical protein LOC100274587	-	2e+0	At1g35320	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.5581.1.S1_at	AF143447.1	rough sheath2	-	1e-15	At2g37630	AS1 (ASYMMETRIC LEAVES 1)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6448.1.A1_at	BG842262	antigenic determinant of rec-A protein	-	3e-18	At1g55460	Kin17 DNA-binding protein-related	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.5837.1.S1_at	AI649832	photosystem II reaction center W protein	-	6e+0	At5g66710	protein kinase, putative	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.549.1.A1_at	AF244686.1	glutathione S-transferase GST 21	-	2e+0	At2g09840	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.433.1.A1_at	AF069908.1	pyruvate dehydrogenase2	-	1e-43	At5g50850	MAB1 (MACCI-BOU)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.15348.1.A1_x_at	CF637051	proline oxidase	-	6e-1	At2g20619	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9927.1.S1_at	BM380524	DNA polymerase epsilon subunit 3	-	2e+0	At5g45090	AtPP2-A7 (Phloem protein 2-A7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At4g14358	6240839	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-6	54	Glycine max	PsAffx.CL429Contig1_at	PsAffx.CL429Contig1	-	-	3e-1	At3g06040	ribosomal protein L12 family protein	C.G.	S.X.	Please select
0.53	1e-45	182	Hordeum vulgare	Contig12977_at	Contig12977	-	-	5e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.57	2e-59	230	Oryza sativa	Os.27925.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e+0	32	Populus trichocarpa	PtpAffx.99938.1.A1_s_at	BP937099	hypothetical protein	-	2e+0	At4g21810	DER2.1 (DERLIN-2.1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	1e-49	196	Triticum aestivum	Ta.30589.1.S1_s_at	BQ838162	-	-	2e+0	At4g08455	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1610934_s_at	CA816790	hypothetical protein LOC100241651	-	1e-10	At3g56290	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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