Gene omics information

Query gene ID	Zm.17743.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.61	79.5	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.16988.1.A1_at	L10634.1	beta-7 tubulin	-	4e-117	At5g23860	TUB8	S.X.	H.G.	Please select
0.59	76.1	Zm.6475.1.A1_at	CK347790	hypothetical protein LOC100277255	-	5e+0	At5g57400	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	S.X.	H.G.	Please select
0.44	55.7	Zm.5201.1.S1_at	BM080627	secondary cell wall-related glycosyltransferase family 47	-	6e-11	At5g61840	GUT1	S.X.	H.G.	Please select
0.42	51.3	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	S.X.	H.G.	Please select
0.41	49.7	Zm.4132.1.A1_at	CO529833	hypothetical protein LOC100276765	-	4e-14	At1g16520	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select
0.38	44.2	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.3	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-33	143	Zm.17578.1.A1_at	CK368635	-	-	2e+0	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.9421.1.S1_at	CF627701	hypothetical protein LOC100216648	-	4e-2	At3g27380	SDH2-1	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8291.1.A1_at	BM267306	-	-	2e+0	At3g48630	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6992.1.A1_at	AY105449.1	16kDa membrane protein	-	5e-7	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6017.1.A1_at	AI666208	hypothetical protein LOC100274747 /// hypothetical protein LOC100277021	-	2e+0	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9745.1.A1_at	BM341408	-	-	2e+1	At5g24570	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8725.1.A1_at	BM075362	-	-	3e+1	At5g42630	ATS (ABERRANT TESTA SHAPE)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8268.1.S1_at	CK826607	thioredoxin M-type	-	1e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7721.1.A1_at	BM079630	-	-	6e+0	At4g10465	metal ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At3g42180	823191	catalytic/ transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups, catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	GmaAffx.91693.1.S1_s_at	CF807418	-	-	1e-2	At3g42180	catalytic/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig12007_s_at	Contig12007	-	-	9e-1	At4g21620	glycine-rich protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os04g0668800	AY224471.1	-	Putative thiol-disulphide oxidoreductase DCCfamily protein	1e-7	At5g50100	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e+0	32	Populus trichocarpa	PtpAffx.89262.2.S1_a_at	CV237169	hypothetical protein	-	1e-13	At3g06790	plastid developmental protein DAG, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.84950.2.S1_at	CA618373	-	-	1e+1	At4g14723	-	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1622741_at	CB343444	-	-	2e-1	At4g05040	ankyrin repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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