Gene omics information

Query gene ID	Zm.17740.1.A1_at
Gene name	hypothetical protein LOC100277215
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.5	Zm.17740.1.A1_at	CK370696	hypothetical protein LOC100277215	-	6e+0	At3g29797	-	S.X.	H.G.	Please select
0.56	74.4	Zm.2555.1.A1_at	CO528379	adaptor complexes medium subunit family protein	-	2e+0	At5g59860	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.88.1.A1_s_at	AI665347	carnitine racemase/ catalytic	-	3e+0	At5g35375	unknown protein	S.X.	H.G.	Please select
0.31	31.6	ZmAffx.988.1.S1_at	AI834703	-	-	3e+0	At5g50562	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.17976.1.A1_at	CK827611	hypothetical protein LOC100277421	-	1e+0	At3g61220	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.6497.1.A1_at	AI692097	serine/threonine-protein kinase AtPK19	-	5e+0	At3g08730	PK1 (PROTEIN-SERINE KINASE 1)	S.X.	H.G.	Please select
0.29	28.1		-	-	-	0			S.X.	H.G.	Please select
0.27	24.6	ZmAffx.51.1.S1_at	AI665015	Hypothetical protein LOC100217062	-	1e+1	At5g54215	-	S.X.	H.G.	Please select
0.26	22.7	Zm.4780.1.S1_at	CF057781	-	-	3e+0	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.26	22.7	Zm.4510.3.S1_at	AI734509	hypothetical protein LOC100193304	-	2e-1	At5g24879	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	98.5	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.0	98.2	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.2	98.0	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
7.3	97.8	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.4	97.5	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.4	97.0	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.6	96.4	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	8e-65	246	Zm.17740.2.A1_a_at	BI430966	hypothetical protein LOC100277215	-	2e+0	At1g77200	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.14	3e-27	121	Zm.1778.1.A1_at	AW438152	hypothetical protein LOC100277199	-	7e+0	At2g20453	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8053.1.A1_at	AY106785.1	hypothetical protein LOC100273786 /// xaa-Pro aminopeptidase 1	-	6e-14	At4g36760	ATAPP1	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.2521.1.A1_at	CO519789	hypothetical protein LOC100276170	-	1e-2	At5g63980	SAL1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4892.2.S1_at	AI783045	SPR1	-	9e-5	At1g26355	SP1L1 (SPIRAL1-LIKE1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4907.1.S1_at	AW000018	RHB1A	-	1e-2	At3g62610	ATMYB11 (MYB DOMAIN PROTEIN 11)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2352.1.S1_at	CF009846	hypothetical protein LOC100277532	-	3e-1	At5g63480	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2380.1.A1_at	AW520012	tubulin--tyrosine ligase-like protein 12	-	6e-1	At1g77550	protein binding / tubulin-tyrosine ligase	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.10234.1.S1_at	BM379520	abscisic stress protein homolog	-	2e-1	At1g26110	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At3g29797	5008044	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.92003.1.S1_x_at	CF807728	chalcone isomerase 1B1	-	1e+0	At3g59320	integral membrane protein, putative	C.G.	S.X.	Please select
0.09	5e-5	48	Hordeum vulgare	Contig12220_at	Contig12220	-	-	6e+0	At3g51642	unknown protein	C.G.	S.X.	Please select
0.05	1e-5	52	Oryza sativa	Os01g0644600	CR293455	-	Multihaem cytochrome domain containing protein	2e-1	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.94726.1.A1_at	CV274199	CPK related protein kinase 7	-	4e-7	At3g50530	CRK (CDPK-related kinase)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	4e-84	311	Triticum aestivum	Ta.20803.1.S1_at	CA621070	-	-	7e-1	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1618235_at	BQ792605	hypothetical protein LOC100263435	-	2e-8	At1g55690	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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