Gene omics information

Query gene ID	Zm.17712.1.S1_at
Gene name	hypothetical protein LOC100275406
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.17712.1.S1_at	CK370052	hypothetical protein LOC100275406	-	8e-20	At5g19855	unknown protein	S.X.	H.G.	Please select
0.82	94.6	Zm.12526.1.A1_x_at	AI734393	-	-	3e+0	At1g58150	unknown protein	S.X.	H.G.	Please select
0.78	92.5	Zm.9952.1.A1_at	BM349898	-	-	6e+0	At5g46115	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.15.1.A1_at	AY271262.1	NADP malic enzyme3	-	3e-16	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.908.1.S1_at	AI770943	hypothetical protein LOC100279225	-	8e-1	At5g41720	-	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.917.1.S1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.1690.1.A1_at	CK347441	density-regulated protein	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.10674.1.A1_at	BM380580	hypothetical protein LOC100194243	-	1e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.848.1.A1_at	AI770631	-	-	8e-1	At1g22720	wall-associated kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.6	99.6	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
12.6	98.7	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.0	98.2	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-3	40	Zm.9319.1.A1_at	CF627080	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	C.G.	S.X.	Please select
0.02	7e-3	40	Zm.2470.1.A1_at	AY108770.1	hypothetical protein LOC100193081	-	2e-20	At1g16270	protein kinase family protein	C.G.	S.X.	Please select
0.06	7e-3	40	Zm.17750.1.S1_at	CK371145	-	-	1e+1	At4g13575	unknown protein	C.G.	S.X.	Please select
0.04	7e-3	40	Zm.17643.1.S1_at	CK368600	-	-	2e-1	At5g54850	unknown protein	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.17645.1.A1_at	CK368768	hypothetical protein LOC100193071	-	3e-10	At4g38900	bZIP protein	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.17708.1.S1_at	CK369560	-	-	3e-1	At3g55460	SCL30	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.17714.1.A1_at	CF626729	-	-	2e-27	At2g44610	RAB6A	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.17276.1.S1_at	CF034932	-	-	2e+0	At5g13290	CRN (CORYNE)	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.16594.2.S1_at	CK371100	-	-	4e-7	At5g65620	peptidase M3 family protein / thimet oligopeptidase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	8e-20	97	Arabidopsis thaliana	At5g19855	832106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	36	Glycine max	PsAffx.psZO001iB01r_s_at	PsAffx.psZO001iB01r	-	-	3e+0	At5g62750	unknown protein	C.G.	S.X.	Please select
0.27	5e-69	260	Hordeum vulgare	Contig5175_at	Contig5175	-	-	4e-11	At5g19855	unknown protein	C.G.	S.X.	Please select
0.24	4e-54	212	Oryza sativa	Os03g0807900	AK060962.1	-	Conserved hypothetical protein	2e-16	At5g19855	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	4e-13	75	Populus trichocarpa	PtpAffx.39050.2.S1_at	CK090154	hypothetical protein	-	4e-25	At5g19855	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	7e-8	57	Triticum aestivum	Ta.7806.1.A1_at	BJ230365	-	-	1e-6	At5g19855	unknown protein	C.G.	S.X.	Please select
0.12	2e-5	48	Vitis vinifera	1610033_s_at	CA816852	hypothetical protein LOC100246804	-	4e-28	At5g19855	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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