Gene omics information

Query gene ID	Zm.17687.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.17687.1.S1_at	CK370166	-	-	2e-1	At1g30972	-	S.X.	H.G.	Please select
0.57	75.1	Zm.697.1.A1_a_at	AB102957.1	histidine kinase 3	-	1e-17	At5g35750	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)	S.X.	H.G.	Please select
0.55	71.6	Zm.6684.1.S1_x_at	CF019431	60S ribosomal protein L29	-	4e-19	At3g06700	60S ribosomal protein L29 (RPL29A)	S.X.	H.G.	Please select
0.53	69.1	Zm.236.1.S1_at	AJ011615.1	SBP-domain protein2	-	1e-2	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	S.X.	H.G.	Please select
0.50	65.7	Zm.7713.1.A1_at	BM079602	-	-	1e+0	At2g05635	ATP binding / ATP-dependent DNA helicase/ DNA binding	S.X.	H.G.	Please select
0.39	45.6	Zm.12634.4.S1_a_at	CF057123	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
53.4	100.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
47.1	100.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
43.8	100.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	6e-12	69	ZmAffx.554.1.A1_at	AI714384	-	-	6e-1	At3g15280	unknown protein	C.G.	S.X.	Please select
0.16	6e-12	69	ZmAffx.554.1.S1_at	AI714384	-	-	6e-1	At3g15280	unknown protein	C.G.	S.X.	Please select
0.12	3e-10	63	Zm.17309.1.A1_s_at	CK369677	t-snare	-	4e+0	At5g64680	unknown protein	C.G.	S.X.	Please select
0.12	3e-10	63	Zm.17309.1.A1_at	CK369677	-	-	4e+0	At5g64680	unknown protein	C.G.	S.X.	Please select
0.08	3e-7	54	Zm.4005.1.A1_at	BE345363	-	-	4e+0	At1g68140	-	C.G.	S.X.	Please select
0.12	1e-6	52	Zm.14843.1.S1_at	BI675128	hypothetical protein LOC100276290	-	7e-2	At5g03345	-	C.G.	S.X.	Please select
0.05	1e-6	52	Zm.107.1.S1_at	AY104270.1	glutamine synthetase2	-	2e-17	At3g17820	ATGSKB6	C.G.	S.X.	Please select
0.21	5e-6	50	ZmAffx.761.1.A1_at	AI746033	-	-	8e+0	At5g50840	-	C.G.	S.X.	Please select
0.21	5e-6	50	ZmAffx.761.1.S1_at	AI746033	-	-	8e+0	At5g50840	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-1	36	Arabidopsis thaliana	At1g30972	5007743	-	Encodes a Plant thionin family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	PsAffx.C5000099_at	PsAffx.C5000099	-	-	5e+0	At1g65484	unknown protein	C.G.	S.X.	Please select
0.06	1e-3	42	Hordeum vulgare	Contig24062_at	Contig24062	-	-	9e+0	At5g54580	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.06	4e-1	36	Oryza sativa	OsAffx.9818.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.215188.1.S1_at	pmrna29236	hypothetical protein	-	3e+0	At3g60440	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	7e-1	34	Triticum aestivum	TaAffx.59763.1.S1_at	CA595700	-	-	3e+0	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1609605_at	CF209617	-	-	4e+0	At5g43580	serine-type endopeptidase inhibitor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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