Gene omics information

Query gene ID	Zm.17686.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.17686.1.A1_at	CF632894	-	-	3e-1	At5g52270	vesicle transport protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.12626.2.A1_a_at	BG841446	craniofacial development protein 1	-	3e-1	At1g01640	speckle-type POZ protein-related	S.X.	H.G.	Please select
0.43	52.8	Zm.16207.1.S1_at	AY109575.1	-	-	6e-43	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	S.X.	H.G.	Please select
0.10	4.6	Zm.18571.1.A1_at	CO518311	Hypothetical protein LOC100217207	-	1e+0	At5g61790	calnexin 1 (CNX1)	S.X.	H.G.	Please select
0.08	3.4	Zm.8703.1.A1_at	BM337839	-	-	1e+0	At4g25330	unknown protein	S.X.	H.G.	Please select
0.06	2.3	Zm.899.1.A1_at	CK370176	esterase	-	6e-7	At1g29840	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	98.8	GSM202281	Mo17 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
13.0	98.7	GSM202285	Mo17 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
10.4	98.4	GSM202277	Mo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
9.9	98.3	GSM258184	Mo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
8.5	98.1	GSM258175	Mo17 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.9	97.9	GSM202411	Zmet2 study 11-day seedling aerial tissue genotype Mo17 zmet2-m1 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.7	97.9	GSM202402	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep1	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.3	97.8	GSM202410	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.2	97.8	GSM258193	Mo17 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.1	97.7	GSM202407	Zmet2 study 11-day seedling aerial tissue genotype Mo17 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	6e-149	525	Zm.6080.1.A1_at	AY106192.1	hypothetical protein LOC100276950	-	5e+0	At1g04778	unknown protein	C.G.	S.X.	Please select
0.66	6e-149	525	Zm.6080.1.A1_a_at	AY106192.1	hypothetical protein LOC100276950	-	5e+0	At1g04778	unknown protein	C.G.	S.X.	Please select
0.48	4e-85	313	Zm.6080.2.S1_at	AI668342	-	-	8e+0	At5g20100	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.1860.1.A1_at	AY106976.1	gibberellin-regulated protein 2	-	2e+0	At1g22690	gibberellin-responsive protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.9747.2.S1_x_at	CK370471	-	-	1e+1	At5g67040	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6957.1.A1_at	AI619366	hypothetical protein LOC100279739	-	2e+0	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.6984.5.S1_a_at	AI770726	hypothetical protein LOC100193571	-	5e-8	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6984.1.S1_a_at	CF006071	hypothetical protein LOC100193571 /// hypothetical protein LOC100276347	-	1e-7	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6984.1.S1_x_at	CF006071	hypothetical protein LOC100193571	-	1e-7	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At5g52270	835303	vesicle transport protein-related	F:molecular_function unknown;P:transport, vesicle-mediated transport;C:integral to membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	Gma.8294.1.S1_s_at	BM140009	-	-	4e-1	At1g67350	unknown protein	C.G.	S.X.	Please select
0.34	9e-59	226	Hordeum vulgare	Contig5285_at	Contig5285	-	-	1e+0	At2g36210	auxin-responsive family protein	C.G.	S.X.	Please select
0.31	7e-41	169	Oryza sativa	Os03g0685900	AK062981.1	-	Conserved hypothetical protein	1e+0	At2g28710	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.2833.1.S1_at	BU813749	-	-	7e-1	At5g59490	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	4e-75	282	Triticum aestivum	TaAffx.58232.3.S1_at	CA625780	-	-	3e+0	At1g04778	unknown protein	C.G.	S.X.	Please select
0.12	2e-3	42	Vitis vinifera	1620495_at	CA812269	hypothetical protein LOC100255760	-	5e-9	At1g67350	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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