Gene omics information

Query gene ID	Zm.17682.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.17682.1.S1_at	CK369994	-	-	9e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	S.X.	H.G.	Please select
0.80	94.0	Zm.7650.1.A1_at	BM079330	hypothetical protein LOC100191988	-	5e+0	At2g03931	-	S.X.	H.G.	Please select
0.80	94.0	Zm.17683.1.S1_at	CK370020	-	-	3e-1	At1g58170	disease resistance-responsive protein-related / dirigent protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.3884.1.A1_at	BQ486479	alpha-expansin 9	-	1e-1	At1g04778	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.16447.1.S1_at	CF348931	-	-	1e+0	At5g16580	BGLU2 (BETA GLUCOSIDASE 2)	S.X.	H.G.	Please select
0.22	16.9	Zm.10253.1.A1_at	BM381237	AN18	-	2e+1	At5g18800	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.2	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.3	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.8	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	7e-49	192	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.6775.1.A1_at	AY105702.1	ethylene response factor	-	2e-1	At1g15360	SHN1 (SHINE 1)	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.1753.1.A1_a_at	AF326484.1	NOD26-like membrane integral protein ZmNIP2-1	-	5e-5	At1g80760	NIP6	C.G.	S.X.	Please select
0.02	6e-3	40	Zm.7611.2.A1_at	BM268818	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	C.G.	S.X.	Please select
0.03	6e-3	40	Zm.7611.1.A1_a_at	BM347935	IAA24 - auxin-responsive Aux/IAA family member	-	3e-2	At3g04730	IAA16	C.G.	S.X.	Please select
0.03	6e-3	40	Zm.6436.1.A1_at	AI665672	-	-	1e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.02	6e-3	40	Zm.5895.1.A1_at	BM073861	hypothetical protein LOC100193058	-	8e-7	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.03	6e-3	40	Zm.5804.1.A1_a_at	CF626917	hypothetical protein LOC100275467	-	4e-1	At4g18970	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.04	6e-3	40	Zm.3401.1.A1_at	CK828003	hypothetical protein LOC100278685	-	1e+0	At5g57080	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At1g07950	837310	surfeit locus protein 5 family protein / SURF5 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.81443.1.S1_at	BF596093	-	-	5e-2	At1g14730	-	C.G.	S.X.	Please select
0.04	7e-3	40	Hordeum vulgare	HVSMEg0001F08r2_at	HVSMEg0001F08r2	-	-	1e-9	At3g43980	40S ribosomal protein S29 (RPS29A)	C.G.	S.X.	Please select
0.37	4e-20	99	Oryza sativa	Os02g0732300	AK107773.1	-	Conserved hypothetical protein	5e+0	At4g18070	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-3	42	Populus trichocarpa	PtpAffx.218069.1.S1_at	pmrna33590	hypothetical protein	-	1e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	6e-5	48	Triticum aestivum	Ta.16411.1.S1_at	CA605940	-	-	9e-1	At1g80310	sulfate transmembrane transporter	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1615135_at	CD797887	-	-	1e+1	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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