Gene omics information

Query gene ID	Zm.17677.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.17677.1.S1_at	CK369609	-	-	4e-1	At1g77220	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.12007.1.A1_at	BM382593	-	-	2e+0	At4g28500	ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)	S.X.	H.G.	Please select
0.46	58.4	Zm.5263.1.A1_a_at	AW433480	3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase	-	1e-1	At3g62160	transferase family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.8018.1.S1_at	CA402656	hypothetical protein LOC100273830	-	2e-28	At1g47640	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.16694.1.A1_a_at	Z14994.1	-	-	2e-11	At5g53740	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.9752.1.A1_at	CF629450	hypothetical protein LOC100279701	-	2e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-3	42	ZmAffx.1221.1.S1_at	11990232-113	-	-	1e+0	At1g07140	SIRANBP	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6713.2.A1_at	CK369338	hypothetical protein LOC100273868	-	2e-84	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5688.2.A1_at	BM338540	charged multivesicular body protein 4b	-	1e-45	At2g19830	SNF7.2	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.3514.1.S1_at	BM079443	hypothetical protein LOC100279193	-	2e+0	At4g05631	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.299.1.S1_a_at	L35914.1	malate synthase1	-	3e-16	At5g03860	MLS (MALATE SYNTHASE)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.16639.1.A1_at	CF635693	Hypothetical protein LOC100191827	-	2e-3	At4g10840	kinesin light chain-related	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.13862.2.S1_at	AY270039.1	Na+/H+ antiporter NHX4	-	5e-2	At3g06370	NHX4 (SODIUM HYDROGEN EXCHANGER 4)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.1350.1.S1_at	AW400059	-	-	2e-1	At5g56325	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At1g77220	844058	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.47108.1.S1_at	BF010253	-	-	2e+0	At2g11270	citrate synthase-related	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEi0002J01r2_x_at	HVSMEi0002J01r2	-	-	6e+0	At4g39150	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.23	2e-38	161	Oryza sativa	Os06g0726600	AK058839.1	-	Protein of unknown function family protein	3e-22	At4g38360	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.213170.1.S1_at	pmrna25763	hypothetical protein	-	8e-2	At1g35900	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	9e-18	91	Triticum aestivum	Ta.26222.1.S1_x_at	CD452940	-	-	7e+0	At4g26055	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1613720_at	CF517170	hypothetical protein LOC100247854	-	4e+0	At5g57180	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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