Gene omics information

Query gene ID	Zm.17625.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.3	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	S.X.	H.G.	Please select
0.60	77.8	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.6147.2.S1_at	CD942228	-	-	4e-24	At3g51800	ATG2	S.X.	H.G.	Please select
0.40	48.5	Zm.824.1.A1_a_at	CF625698	-	-	4e-2	At4g14000	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.18012.1.A1_at	CK827313	-	-	2e-3	At5g48950	thioesterase family protein	S.X.	H.G.	Please select
0.18	11.6	Zm.9822.1.A1_at	BM348325	-	-	4e+0	At2g44700	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.9	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.9	97.7	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	4e-132	470	Zm.493.1.A1_at	BM333846	LIM transcription factor homolog	-	5e-23	At1g10200	WLIM1	C.G.	S.X.	Please select
0.07	1e-5	50	Zm.1212.1.S1_at	CF011510	hypothetical protein LOC100194335	-	2e-4	At3g55770	LIM domain-containing protein	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.403.1.S1_at	AF063865.1	xylanase1	-	1e-2	At4g33840	glycosyl hydrolase family 10 protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.17260.1.A1_at	CK145375	hypothetical protein LOC100277879	-	1e+0	At2g38730	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please select
0.06	2e-1	36	Zm.6444.1.S1_at	AY103686.1	pollen-specific protein SF3	-	8e-22	At3g55770	LIM domain-containing protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.13705.1.A1_at	AY106620.1	-	-	9e-7	At3g55770	LIM domain-containing protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.8283.1.S1_at	BM073508	hypothetical protein LOC100276098	-	7e-1	At3g21865	PEX22 (peroxin 22)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6962.1.S1_at	CA404020	sorbitol dehydrogenase	-	2e-1	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.3763.1.S1_at	CO531085	UDP-N-acetylglucosamine transferase subunit alg13	-	5e-2	At4g16710	glycosyltransferase family protein 28	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	4e-23	109	Arabidopsis thaliana	At1g10200	837558	WLIM1	F:transcription factor activity, zinc ion binding;P:biological_process unknown;C:plasma membrane;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	5e-17	89	Glycine max	GmaAffx.92214.1.S1_s_at	CF807939	-	-	1e-30	At1g10200	WLIM1	C.G.	S.X.	Please select
0.44	1e-98	359	Hordeum vulgare	Contig5393_at	Contig5393	-	-	4e-20	At1g10200	WLIM1	C.G.	S.X.	Please select
0.47	5e-70	266	Oryza sativa	Os12g0510900	AK058220.1	-	The start codon is not identified.	3e-17	At1g10200	WLIM1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	3e-9	63	Populus trichocarpa	Ptp.4900.1.S1_s_at	AB079510.1	hypothetical protein	-	3e-61	At1g10200	WLIM1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	6e-99	361	Triticum aestivum	Ta.14482.1.S1_at	BJ214882	-	-	2e-16	At1g10200	WLIM1	C.G.	S.X.	Please select
0.12	3e-18	91	Vitis vinifera	1617877_at	CF517286	hypothetical protein LOC100266902	-	6e-10	At1g10200	WLIM1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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