Gene omics information

Query gene ID	Zm.17615.1.A1_at
Gene name	protein binding protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	Zm.17615.1.A1_at	CK347383	protein binding protein	-	2e+0	At2g20620	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.6847.1.A1_at	BQ539131	hypothetical protein LOC100276011	-	3e-1	At3g29130	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.3090.1.S1_at	AY104155.1	hypothetical protein LOC100192770	-	2e-4	At4g27320	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.5652.1.A1_at	AI629811	CCT motif family protein	-	7e-2	At3g07650	COL9 (CONSTANS-LIKE 9)	S.X.	H.G.	Please select
0.25	21.3	Zm.8592.1.A1_at	BE051743	hypothetical protein LOC100273152	-	3e+0	At5g43200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.24	19.8	ZmAffx.1184.1.S1_at	AW927978	hypothetical protein LOC100273162	-	1e-2	At2g38640	unknown protein	S.X.	H.G.	Please select
0.22	16.9	Zm.7932.1.A1_at	BM378311	hypothetical protein LOC100278269	-	2e-2	At5g20165	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.6295.1.A1_at	AY107687.1	NADH-ubiquinone oxidoreductase B18 subunit	-	2e+0	At3g55670	-	S.X.	H.G.	Please select
0.16	9.4	Zm.5515.1.A1_at	CF631927	-	-	3e+0	At2g01580	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.0	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6532.4.S1_x_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select
0.04	2e-1	36	Zm.18801.1.A1_at	CO526094	hypothetical protein LOC100191640	-	7e-3	At2g30580	DRIP2 (DREB2A-INTERACTING PROTEIN 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.8825.1.A1_at	BM378571	hypothetical protein LOC100279923	-	1e-9	At4g24520	ATR1 (ARABIDOPSIS P450 REDUCTASE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7740.1.A1_at	BM079714	hypothetical protein LOC100193967	-	3e-2	At1g45249	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7595.1.A1_at	CD437071	-	-	6e+0	At4g27360	dynein light chain, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.5271.1.A1_at	AI615233	-	-	1e+0	At1g02160	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.2477.1.A1_at	BM347825	hypothetical protein LOC100191278	-	3e-9	At5g15120	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.2525.1.A1_at	BM380204	germin-like protein subfamily 1 member 11	-	3e-2	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g20620	816588	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	Gma.788.1.A1_at	BE820417	-	-	8e-1	At3g02390	unknown protein	C.G.	S.X.	Please select
0.16	7e-23	107	Hordeum vulgare	Contig15918_at	Contig15918	-	-	2e+0	At5g43285	-	C.G.	S.X.	Please select
0.09	6e-8	59	Oryza sativa	Os03g0798200	AK071454.1	-	Zn-finger, RING domain containing protein	4e-9	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.201468.1.S1_at	pmrna2885	histidine phosphotransfer protein	-	8e-1	At5g20810	auxin-responsive protein, putative / small auxin up RNA (SAUR_B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.93016.1.S1_at	BJ235954	-	-	3e+0	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620365_at	CF201468.1	-	-	3e+0	At4g25950	VATG3 (vacuolar ATP synthase G3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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