Gene omics information

Query gene ID	Zm.17538.1.S1_at
Gene name	hypothetical protein LOC100273692
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	96.7	Zm.17538.1.S1_at	CK370571	hypothetical protein LOC100273692	-	1e+0	At5g50710	unknown protein	S.X.	H.G.	Please select
0.62	79.8	Zm.8505.1.A1_at	AY107567.1	-	-	1e-4	At1g51870	protein kinase family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.18474.1.A1_at	CO531196	hypothetical protein LOC100192651	-	6e+0	At5g61997	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.19049.1.A1_at	BG267149	hypothetical protein LOC100274230	-	4e-5	At4g31550	WRKY11	S.X.	H.G.	Please select
0.54	69.8	Zm.7399.1.S1_at	AY106106.1	hypothetical protein LOC100274088	-	1e-79	At3g07980	MAPKKK6	S.X.	H.G.	Please select
0.52	67.3	Zm.6045.4.S1_at	AY105966.1	hypothetical protein LOC100191419	-	5e-4	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.2678.1.A1_at	BM339111	hypothetical protein LOC100193236	-	2e-1	At1g05180	AXR1 (AUXIN RESISTANT 1)	S.X.	H.G.	Please select
0.47	59.9	Zm.2713.2.S1_a_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	S.X.	H.G.	Please select
0.44	55.7	Zm.12589.1.S1_a_at	AY389497.1	hypothetical protein LOC100193645 /// ribosomal protein S6 kinase	-	4e-12	At3g08720	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)	S.X.	H.G.	Please select
0.44	55.7	Zm.12595.1.S1_at	BG266819	-	-	1e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	94.0	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.8	93.5	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.8	93.5	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	36	Zm.377.1.A1_at	AI714846	shaggy kinase homolog	-	2e-35	At5g26751	ATSK11	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.16227.1.A1_at	BI180294	hypothetical protein LOC100273421	-	2e-10	At1g14520	MIOX1 (MYO-INISITOL OXYGENASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8204.1.A1_at	BM073273	hypothetical protein LOC100193193	-	5e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.813.2.A1_at	AY103619.1	-	-	5e-15	At4g14160	transport protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4270.2.A1_a_at	CF628998	Bowman-Birk serine protease inhibitor-like	-	2e-2	At4g26020	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.123.1.S1_at	AY109146.1	heat shock complementing factor1	-	2e-5	At5g57390	AIL5 (AINTEGUMENTA-LIKE 5)	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.522.1.A1_at	AI711639	-	-	3e+0	At5g40650	SDH2-2	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.522.1.S1_at	AI711639	-	-	3e+0	At5g40650	SDH2-2	C.G.	S.X.	Please select
0.04	7e+0	30	ZmAffx.226.1.A1_at	AI670238	-	-	1e+1	At5g49710	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g50710	835142	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	9e-2	38	Glycine max	GmaAffx.76595.1.S1_at	BE805128	-	-	2e+0	At5g05965	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HVSMEa0008L11r2_at	HVSMEa0008L11r2	-	-	2e-1	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	C.G.	S.X.	Please select
0.04	1e-7	57	Oryza sativa	Os01g0296100	AK120194.1	-	-	1e-34	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.24725.1.A1_s_at	CV248487	hypothetical protein	-	3e-4	At4g07960	ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.12090.1.S1_at	BJ296582	-	-	6e+0	At3g43410	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1614099_at	CB976803	-	-	4e+0	At5g40855	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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