Gene omics information

Query gene ID	Zm.17519.1.A1_at
Gene name	FIP1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.17519.1.A1_at	BQ538711	FIP1	-	1e-1	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	S.X.	H.G.	Please select
0.75	90.8	Zm.4257.1.S1_at	AW076388	respiratory burst oxidase protein A	-	5e-12	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.52	67.3	Zm.6268.1.A1_at	BM073308	hypothetical protein LOC100192813	-	2e-3	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.398.1.A1_at	AI676826	-	-	3e+0	At4g15150	glycine-rich protein	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.936.1.S1_at	AI677620	-	-	3e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	S.X.	H.G.	Please select
0.36	41.3	Zm.17521.1.S1_at	CK370540	complex 1 protein containing protein	-	2e+0	At4g39340	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	S.X.	H.G.	Please select
0.31	31.6	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.1	99.2	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.2	98.8	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.6	98.7	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.3	98.7	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.2	98.5	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	7e-17	87	Zm.17782.1.A1_at	BM079932	-	-	1e-4	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.24	1e-12	73	Zm.19228.1.A1_at	CO531773	-	-	9e-3	At5g23350	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.05	2e-4	46	Zm.10778.1.A1_a_at	CF627974	FIP1	-	4e-1	At4g40100	ABA-responsive protein-related	C.G.	S.X.	Please select
0.05	2e-4	46	Zm.10778.1.A1_at	CF627974	FIP1	-	4e-1	At4g40100	ABA-responsive protein-related	C.G.	S.X.	Please select
0.03	1e-3	44	Zm.9574.1.A1_at	BM332377	hypothetical protein LOC100275325	-	4e+0	At5g16130	40S ribosomal protein S7 (RPS7C)	C.G.	S.X.	Please select
0.04	6e-2	38	Zm.17704.1.A1_at	CK369736	-	-	2e-2	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.03	6e-2	38	Zm.10778.2.A1_at	BQ539551	-	-	3e-6	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.649.1.S1_at	AY032604.1	ADP-glucose pyrophosphorylase small subunit	-	5e-43	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.9191.1.A1_at	BM350157	hypothetical protein LOC100279424	-	6e-4	At4g40100	ABA-responsive protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	Arabidopsis thaliana	At5g23370	832401	GRAM domain-containing protein / ABA-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	GmaAffx.66687.1.S1_at	AW570576	-	-	4e-1	At1g74660	MIF1 (MINI ZINC FINGER 1)	C.G.	S.X.	Please select
0.44	4e-77	287	Hordeum vulgare	Contig11237_at	Contig11237	-	-	2e-3	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.43	6e-67	256	Oryza sativa	Os04g0527000	AK099545.1	-	GRAM domain containing protein	4e-5	At5g23350	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-1	36	Populus trichocarpa	PtpAffx.224314.1.S1_at	pmrna42754	hypothetical protein	-	4e-4	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	4e-79	295	Triticum aestivum	Ta.5198.2.S1_a_at	BJ262825	-	-	3e-3	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1610932_at	CF209452	hypothetical protein LOC100261114	-	9e-1	At2g32645	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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