Gene omics information

Query gene ID	Zm.17513.1.A1_at
Gene name	MFP1 attachment factor 1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.17513.1.A1_at	BM074532	MFP1 attachment factor 1	-	5e+0	At1g22840	CYTC-1 (CYTOCHROME C-1)	S.X.	H.G.	Please select
0.78	92.5	ZmAffx.1019.1.S1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.14270.1.A1_a_at	AY105925.1	hypothetical protein LOC100216603	-	2e+0	At3g56510	TBP-binding protein, putative	S.X.	H.G.	Please select
0.58	75.1	Zm.6944.4.A1_a_at	AW498023	actin-1	-	4e-31	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.53	69.1	Zm.14014.1.A1_at	CF050089	NADH-ubiquinone oxidoreductase 23 kDa subunit	-	2e-62	At1g79010	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)	S.X.	H.G.	Please select
0.53	69.1	Zm.1436.1.S1_at	CB617096	beta-hexosaminidase beta chain	-	5e-2	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	S.X.	H.G.	Please select
0.52	67.3	ZmAffx.597.1.A1_at	AI715025	-	-	8e-1	At1g43260	-	S.X.	H.G.	Please select
0.50	65.7	Zm.3607.2.A1_at	CF637896	hypothetical protein LOC100273155	-	3e-3	At5g46800	BOU (A BOUT DE SOUFFLE)	S.X.	H.G.	Please select
0.48	61.3	Zm.17637.1.S1_at	CK368490	-	-	5e+0	At2g22450	riboflavin biosynthesis protein, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.12305.1.A1_at	BQ621105	DNA binding protein	-	2e+0	At5g53700	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.0	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	1e-165	581	Zm.645.1.S1_at	AF118114.1	MFP1 attachment factor 1	-	4e-1	At1g16510	auxin-responsive family protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.5259.1.A1_at	CF041001	-	-	4e-4	At3g26744	ICE1 (INDUCER OF CBF EXPRESSION 1)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.231.1.S1_at	CK827218	invertase2	-	3e-4	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.18520.1.A1_at	CF632042	-	-	8e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.9753.1.A1_at	BM337948	Grx_C15 - glutaredoxin subgroup III	-	2e+1	At2g43261	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.9307.1.A1_at	AY105170.1	stromal cell-derived factor 2	-	6e-1	At3g42310	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.8902.1.A1_at	CD441345	glycosyltransferase-like	-	6e-11	At1g18690	transferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.8671.1.A1_at	CO525023	hypothetical protein LOC100272947	-	1e+0	At1g70830	MLP28 (MLP-LIKE PROTEIN 28)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.663.1.S1_at	AF318075.1	cis-zeatin O-glucosyltransferase1	-	7e-1	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At1g22840	838889	CYTC-1 (CYTOCHROME C-1)	Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-1	38	Glycine max	Gma.395.1.S1_x_at	BQ612875	-	-	2e+0	At3g52510	-	C.G.	S.X.	Please select
0.36	8e-93	339	Hordeum vulgare	Contig1126_s_at	Contig1126	-	-	7e+0	At5g40980	unknown protein	C.G.	S.X.	Please select
0.32	5e-57	222	Oryza sativa	Os03g0209000	AK107769.1	-	MFP1 attachment factor 1	2e+0	At1g62420	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.222872.1.S1_at	pmrna40572	hypothetical protein	-	5e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	2e-98	359	Triticum aestivum	Ta.16659.1.S1_at	CA601941	-	-	8e+0	At5g40980	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1617999_at	CA815163	hypothetical protein LOC100248666	-	4e+0	At3g15280	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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