Gene omics information

Query gene ID	Zm.17510.1.A1_at
Gene name	hypothetical protein LOC100217109
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.17510.1.A1_at	CK144409	hypothetical protein LOC100217109	-	6e-22	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	S.X.	H.G.	Please select
0.55	71.6	Zm.4573.1.A1_at	BM340312	hypothetical protein LOC100273245	-	4e-1	At1g02350	protoporphyrinogen oxidase-related	S.X.	H.G.	Please select
0.33	36.0	Zm.19104.1.A1_at	CO522461	hypothetical protein LOC100274465	-	8e-12	At5g22510	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	S.X.	H.G.	Please select
0.26	22.7	Zm.2895.7.A1_at	BQ164476	hypothetical protein LOC100275739	-	5e-18	At2g40205	60S ribosomal protein L41 (RPL41C)	S.X.	H.G.	Please select
0.18	11.6	Zm.16289.1.A1_at	BM337131	hypothetical protein LOC100217119	-	2e-2	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	S.X.	H.G.	Please select
0.13	6.8	Zm.9576.1.A1_at	CD999634	iron-sulfur assembly protein IscA	-	3e-4	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	710	Zm.18422.1.S1_at	CO521857	nuclear transcription factor Y subunit C-2	-	2e-13	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.06	2e-4	46	Zm.6676.1.S1_at	AW927976	nuclear transcription factor Y subunit C-2	-	2e-3	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	C.G.	S.X.	Please select
0.05	5e-2	38	Zm.6990.1.S1_at	AY105684.1	nuclear transcription factor Y subunit C-2	-	9e-9	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.13689.1.A1_at	CD441118	hypothetical protein LOC100279389	-	1e-19	At1g07570	APK1A	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.9937.1.A1_at	CK786743	-	-	2e-1	At1g03610	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5401.2.A1_at	AY104186.1	hypothetical protein LOC100274064	-	9e-121	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6096.1.A1_at	CF636033	hypothetical protein LOC100273833	-	6e-1	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6096.2.S1_at	AJ006545	-	-	2e-26	At2g21520	transporter	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6096.1.A1_a_at	CF636033	hypothetical protein LOC100273833	-	6e-1	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	6e-22	105	Arabidopsis thaliana	At1g08970	837417	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	heme activated protein (HAP5c)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-7	57	Glycine max	GmaAffx.90612.1.S1_s_at	CF806337	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	C.G.	S.X.	Please select
0.17	9e-47	186	Hordeum vulgare	Contig10374_at	Contig10374	-	-	4e-18	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.39	3e-47	190	Oryza sativa	Os02g0170500	AU094053	-	Transcription factor	2e-6	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	1e-5	52	Populus trichocarpa	Ptp.2559.1.A1_a_at	CV278989	-	-	9e-40	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	5e-38	159	Triticum aestivum	Ta.7755.1.A1_at	BJ286982	-	-	3e-11	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1611535_at	CA810934	-	-	9e-29	At4g26600	nucleolar protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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