Gene omics information

Query gene ID	Zm.17443.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	92.5	Zm.17443.1.A1_at	CK347379	-	-	5e+0	At4g14100	transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.63	81.1	Zm.17174.1.A1_at	CO531239	hypothetical protein LOC100273979	-	2e-6	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	S.X.	H.G.	Please select
0.59	76.1	Zm.17330.1.S1_at	CK369873	-	-	1e+0	At2g37000	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.5012.1.A1_at	CK849978	auxin response factor 75	-	9e-1	At3g45050	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.3714.1.A1_at	BQ779267	eukaryotic translation initiation factor 3 subunit 3	-	2e-32	At1g10840	TIF3H1	S.X.	H.G.	Please select
0.42	51.3	Zm.1218.1.A1_at	BM267451	-	-	1e+0	At4g21970	unknown protein	S.X.	H.G.	Please select
0.34	37.2	Zm.17923.1.A1_at	AY110526.1	hypothetical protein LOC100276264	-	1e-1	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	S.X.	H.G.	Please select
0.32	33.4	Zm.10125.3.A1_x_at	BM381172	cytidine/deoxycytidylate deaminase family protein	-	4e+0	At1g47265	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.14429.4.A1_at	CK827265	RALF	-	6e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please select
0.30	29.8	Zm.2792.1.S1_at	CD998237	hypothetical protein LOC100276061	-	8e-10	At5g59960	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.4	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.5	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-10	63	Zm.7011.1.S1_s_at	CA398268	hypothetical protein LOC100191203	-	3e-19	At4g21110	G10 family protein	C.G.	S.X.	Please select
0.10	6e-10	63	Zm.7011.1.S1_at	CA398268	hypothetical protein LOC100191203	-	3e-19	At4g21110	G10 family protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.2695.1.S1_at	CN844861	hypothetical protein LOC100279628	-	1e-12	At2g44530	ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.2710.1.S1_at	CO520765	gibberellin receptor GID1L2	-	1e+1	At5g06570	hydrolase	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7972.1.S1_at	AY108891.1	-	-	2e-6	At2g33740	CUTA	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.400.1.S1_at	AF038585.1	pyruvate dehydrogenase (lipoamide) kinase1	-	7e-26	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.400.1.S1_a_at	AF038585.1	hypothetical protein LOC100193944 /// pyruvate dehydrogenase (lipoamide) kinase1	-	7e-26	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16824.1.S1_a_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At4g14100	827045	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:vacuole;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	Gma.7411.1.A1_at	BU547537	-	-	4e-1	At5g59520	ZIP2	C.G.	S.X.	Please select
0.15	2e-34	145	Hordeum vulgare	Contig9702_at	Contig9702	-	-	2e-8	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	C.G.	S.X.	Please select
0.16	7e-13	75	Oryza sativa	Os09g0442600	AB095097.1	-	Plastid (P)ppGpp synthase	3e-13	At3g14050	RSH2 (RELA-SPOT HOMOLOG 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-1	36	Populus trichocarpa	PtpAffx.11635.1.S1_at	BP931125	hypothetical protein	-	2e-34	At3g14050	RSH2 (RELA-SPOT HOMOLOG 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	7e-24	111	Triticum aestivum	Ta.6013.3.S1_at	CA727964	-	-	2e-11	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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