Gene omics information

Query gene ID	Zm.17441.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.17441.1.A1_at	BM268338	-	-	5e-1	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	S.X.	H.G.	Please select
0.67	85.8	Zm.17358.1.A1_at	CF624129	PTD008 protein /// PTD008 protein	-	1e-1	At3g09770	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4021.1.A1_at	AW231310	hypothetical protein LOC100217057	-	7e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.18099.1.A1_at	CF631457	hypothetical protein LOC100216597	-	2e-3	At5g48560	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.212.1.A1_at	AI670220	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	S.X.	H.G.	Please select
0.37	42.3	ZmAffx.1191.1.A1_at	BE025269	-	-	5e-2	At4g23720	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.8	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.0	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.9	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Zm.8899.1.A1_at	AY105971.1	14-3-3-like protein A	-	1e-13	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.10684.1.S1_at	BM339211	hypothetical protein LOC100217110	-	2e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.2773.1.A1_at	AW067196	-	-	3e+0	At3g56610	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.16513.7.A1_at	CA405325	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.16241.1.A1_at	CF243881	hypothetical protein LOC100216622	-	1e-1	At3g48425	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13959.1.S1_at	BG549495	hypothetical protein LOC100193325	-	5e-1	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.758.1.A1_at	AI746000	hypothetical protein LOC100273671	-	3e-3	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.758.1.S1_at	AI746000	-	-	3e-3	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9082.2.A1_at	BQ619513	-	-	3e-10	At2g25070	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At5g06910	830582	ATJ6 (Arabidopsis J-domain protein 6)	DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	GmaAffx.54274.1.S1_at	BG154271	-	-	2e-26	At1g25250	AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	HVSMEi0003L08r2_at	HVSMEi0003L08r2	-	-	1e+1	At5g48240	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	36	Oryza sativa	Os05g0565500	9633.m04596	-	6-phosphogluconate dehydrogenase, NAD-bindingdomain containing protein	3e+1	At5g64650	ribosomal protein L17 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.99535.1.S1_at	DN500539	-	-	5e-2	At1g56680	glycoside hydrolase family 19 protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e+0	32	Triticum aestivum	TaAffx.106441.1.S1_at	CA718833	-	-	2e+0	At1g17990	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Vitis vinifera	1622392_at	CF202961.1	hypothetical protein LOC100264712	-	5e-6	At5g17190	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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