Gene omics information

Query gene ID	Zm.1739.1.A1_at
Gene name	catalytic/ hydrolase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.1739.1.A1_at	BM337820	catalytic/ hydrolase	-	1e-1	At3g04590	DNA-binding family protein	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1363.1.S1_at	11990232-91	-	-	0	Atcg01110	-	S.X.	H.G.	Please select
0.60	77.8	Zm.13979.1.S1_at	AY106073.1	hypothetical protein LOC100273275	-	8e-22	At2g20130	LCV1 (LIKE COV 1)	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.1336.1.S1_at	11990232-84	-	-	2e-46	Atcg01040	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1468.1.S1_at	11990232-35	-	-	3e-34	Atcg00550	-	S.X.	H.G.	Please select
0.25	21.3	ZmAffx.146.1.S1_at	AI667826	-	-	2e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.0	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-9	63	Zm.8941.1.A1_at	BM334004	hypothetical protein LOC100273259	-	2e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.18520.1.A1_at	CF632042	-	-	8e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.16062.1.S1_at	CF018530	-	-	5e+0	At1g73655	FK506 binding / peptidyl-prolyl cis-trans isomerase	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.15778.1.A1_at	CD448252	hypothetical protein LOC100216752	-	2e-1	At2g38660	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	C.G.	S.X.	Please select
0.05	2e-2	40	Zm.15027.1.A1_at	BM268637	catalytic/ hydrolase	-	7e+0	At3g62040	catalytic/ hydrolase	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.13434.1.A1_at	AW562937	hypothetical protein LOC100192499	-	4e-12	At5g56090	COX15 (cytochrome c oxidase 15)	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.12554.1.S1_at	AY091464.1	sigma factor protein	-	6e-2	At2g45050	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.9790.1.A1_at	CO523101	hypothetical protein LOC100192495	-	1e+0	At2g41225	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.9537.1.A1_at	BM348544	hypothetical protein LOC100193444 /// IAA15 - auxin-responsive Aux/IAA family member	-	2e-4	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At3g04590	819615	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-3	44	Glycine max	Gma.5513.1.S1_at	AW310453	-	-	3e-15	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.46	7e-70	264	Hordeum vulgare	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.50	7e-70	266	Oryza sativa	Os01g0973000	NM_189475.1	-	Pyrimidine 5-nucleotidase family protein	1e-1	At5g59490	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-5	50	Populus trichocarpa	PtpAffx.204960.1.S1_at	pmrna9810	hypothetical protein	-	7e-6	At5g59480	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	2e-170	599	Triticum aestivum	TaAffx.8426.1.S1_at	CA625609	-	-	6e-2	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select
0.06	2e-4	46	Vitis vinifera	1616302_at	CB912509	ripening-related protein-like	-	4e-11	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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