Gene omics information

Query gene ID	Zm.17374.2.A1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.17374.2.A1_a_at	CF637833	-	-	1e+0	At3g43490	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.5908.1.A1_at	AW424447	hypothetical protein LOC100273971	-	2e-2	At1g11890	SEC22	S.X.	H.G.	Please select
0.67	85.8	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.37	42.3	Zm.5796.2.S1_at	AY107655.1	-	-	3e-18	At5g66420	-	S.X.	H.G.	Please select
0.29	28.1	Zm.17741.1.S1_at	CK370742	-	-	4e+0	At5g21430	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.23	18.6	Zm.17516.1.S1_at	CF623514	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.3	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Zm.5679.1.S1_at	CD437138	hypothetical protein LOC100216885	-	3e-3	At2g43950	OEP37	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9181.1.A1_at	CA402930	hypothetical protein LOC100192510	-	5e-2	At2g28710	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5255.1.A1_at	AY109983.1	-	-	2e-1	At3g25590	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5255.1.S1_at	AY109983.1	hypothetical protein LOC100273103	-	2e-1	At3g25590	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3822.1.A1_at	AW091484	hypothetical protein LOC100279280	-	1e-30	At5g57200	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.12688.1.S1_at	CF625305	hypothetical protein LOC100279814	-	2e-2	At2g25970	KH domain-containing protein	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.942.1.S1_at	AI820359	-	-	3e+0	At2g30933	-	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.942.1.A1_at	AI820359	-	-	3e+0	At2g30933	-	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.796.1.A1_at	AI770343	-	-	3e+0	At5g47600	heat shock protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At3g43490	823435	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	Gma.1542.1.S1_at	BF069226	-	-	1e+0	At5g22580	-	C.G.	S.X.	Please select
0.46	2e-16	85	Hordeum vulgare	Contig14983_at	Contig14983	-	-	5e+0	At5g30520	unknown protein	C.G.	S.X.	Please select
0.39	1e-36	155	Oryza sativa	Os07g0659700	AK061060.1	-	Pectin lyase-like family protein	3e-2	At3g54480	SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.218182.1.S1_at	pmrna33729	hypothetical protein	-	3e+0	At1g24996	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	3e-17	89	Triticum aestivum	Ta.12220.1.S1_a_at	BJ238299	-	-	2e-12	At3g54480	SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1622326_at	CF214763	-	-	7e-1	At5g01910	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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