Gene omics information

Query gene ID	Zm.17357.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.17357.1.S1_at	CK370769	-	-	5e+0	At1g29195	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.376.1.A1_at	BM074849	Hypoxically induced transcript 2	-	2e-3	At1g05000	tyrosine specific protein phosphatase family protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.566.1.S1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	S.X.	H.G.	Please select
0.18	11.6	Zm.4705.1.A1_at	BG840802	-	-	2e-6	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select
0.03	1.1	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.5	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.7	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-4	44	Zm.4415.1.A1_at	BM080841	hypothetical protein LOC100274900	-	5e-3	At3g50550	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.1969.1.A1_at	BM378406	hypothetical protein LOC100275298	-	6e+0	At3g15680	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6768.1.S1_at	AI396277	anther-specific proline-rich protein APG	-	2e-4	At1g29670	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.566.1.S1_at	AF244706.1	glutathione transferase41	-	1e+1	At3g09280	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.3400.1.S1_at	CN845120	-	-	2e-9	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2618.1.S1_at	CO520167	hypothetical protein LOC100192576	-	1e-5	At2g21510	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.14805.1.A1_at	BM380633	hypothetical protein LOC100280247	-	3e-6	At1g01720	ATAF1	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.9857.1.A1_at	CA404512	SLT1 protein	-	5e-21	At3g12570	FYD	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.900.1.S1_at	BF728342	hypothetical protein LOC100274100	-	4e-5	At5g65090	BST1 (BRISTLED 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At1g29195	839794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	5e-4	46	Glycine max	GmaAffx.73857.1.S1_at	BM885538	-	-	1e-15	At1g29195	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	Contig590_s_at	Contig590	hypothetical LOC548259	-	1e+0	At4g09840	unknown protein	C.G.	S.X.	Please select
0.34	3e-52	206	Oryza sativa	Os01g0758500	AK107089.1	-	Conserved hypothetical protein	5e-5	At1g29195	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.106271.1.A1_at	DN489878	-	-	1e+0	At4g15660	glutaredoxin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	3e-57	222	Triticum aestivum	TaAffx.106425.1.S1_at	BE425845	-	-	2e-2	At1g29195	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1618710_at	CA816808	similar to Os02g0122000	-	1e-7	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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