Gene omics information

Query gene ID	Zm.17352.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.2928.1.S1_at	BG265909	ATP binding protein	-	1e+1	At5g35090	unknown protein	S.X.	H.G.	Please select
0.14	7.7	Zm.18025.1.S1_at	AY521228.1	osmotic stimulation MAPK	-	7e-2	At1g18040	CDKD1	S.X.	H.G.	Please select
0.10	4.6	Zm.8677.1.A1_at	CO531412	structural constituent of ribosome	-	2e-1	At3g26147	unknown protein	S.X.	H.G.	Please select
0.05	1.9	Zm.5851.15.A1_x_at	AI759130	-	-	9e-1	At2g04031	-	S.X.	H.G.	Please select
0.04	1.5	Zm.17783.1.S1_at	CK370693	ML domain protein	-	1e-1	At1g75550	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.1	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	8e-49	192	Zm.17682.1.S1_at	CK369994	-	-	9e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.02	2e-6	52	Zm.13961.1.S1_at	AY540745.1	hydroperoxide lyase	-	4e+0	At2g05440	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e-4	46	Zm.436.1.S1_at	AF100455.1	liguleless3	-	2e-10	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.03	5e-4	44	Zm.6934.1.A1_at	AY105351.1	hypothetical protein LOC100273323	-	9e-6	At3g01790	ribosomal protein L13 family protein	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.7760.1.A1_s_at	BM080238	hypothetical protein LOC100279754 /// early flowering 4	-	1e+0	At5g16030	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.12065.1.S1_at	CD219268	hypothetical protein LOC100275823	-	5e-1	At5g52605	-	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	C.G.	S.X.	Please select
0.02	7e-3	40	Zm.10513.2.S1_a_at	AY106791.1	hypothetical protein LOC100277818	-	3e-3	At1g68390	unknown protein	C.G.	S.X.	Please select
0.02	7e-3	40	Zm.10513.2.A1_at	AY106791.1	-	-	3e-3	At1g68390	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g53030	835382	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.90612.1.S1_s_at	CF806337	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	C.G.	S.X.	Please select
0.04	2e-3	42	Hordeum vulgare	Contig6633_at	Contig6633	-	-	4e+0	At4g17310	unknown protein	C.G.	S.X.	Please select
0.39	7e-19	95	Oryza sativa	Os02g0732300	AK107773.1	-	Conserved hypothetical protein	5e+0	At4g18070	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.217481.1.S1_at	pmrna32766	hypothetical protein	-	6e+0	At5g35870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	5e-6	52	Triticum aestivum	Ta.16411.1.S1_at	CA605940	-	-	9e-1	At1g80310	sulfate transmembrane transporter	C.G.	S.X.	Please select
0.03	8e-2	36	Vitis vinifera	1609442_at	CF373210	hypothetical protein LOC100243127	-	3e-4	At3g05800	transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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