Gene omics information

Query gene ID	Zm.17347.1.S1_at
Gene name	hypothetical protein LOC100217009
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	94.3	Zm.17347.1.S1_at	CK370714	hypothetical protein LOC100217009	-	1e-9	At4g17310	unknown protein	S.X.	H.G.	Please select
0.79	92.8	Zm.17795.1.A1_at	CK371303	-	-	3e+0	At5g23420	HMGB6	S.X.	H.G.	Please select
0.76	91.1	Zm.17685.1.A1_at	AW126592	-	-	6e-1	At1g55010	PDF1.5 (plant defensin 1.5)	S.X.	H.G.	Please select
0.73	89.9	Zm.509.1.S1_at	AF096871.1	calcium pump1	-	3e-11	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	S.X.	H.G.	Please select
0.72	88.6	Zm.17350.1.A1_at	CO524170	-	-	2e+1	Atcg00300	-	S.X.	H.G.	Please select
0.67	85.8	Zm.16365.1.S1_at	CF625542	hypothetical protein LOC100278838	-	5e+0	At3g44440	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.12134.2.S1_at	AY106643.1	hypothetical protein LOC100193898	-	1e+0	At4g08691	unknown protein	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.789.1.S1_at	AI759114	hypothetical protein LOC100194107	-	3e+0	At4g05010	F-box family protein	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.985.1.S1_at	AI834468	-	-	1e+1	At4g36900	RAP2.10 (related to AP2 10)	S.X.	H.G.	Please select
0.55	71.6	Zm.1737.2.S1_at	AW355997	-	-	8e-1	At1g15140	oxidoreductase NAD-binding domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.4	97.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-8	57	Zm.10015.1.A1_at	AY108556.1	-	-	2e+0	At1g14900	HMGA (HIGH MOBILITY GROUP A)	C.G.	S.X.	Please select
0.04	7e-6	50	Zm.16228.1.S1_a_at	BU197473	hypothetical protein LOC100275186	-	2e-2	At4g17310	unknown protein	C.G.	S.X.	Please select
0.04	7e-6	50	Zm.16228.1.S1_at	BU197473	hypothetical protein LOC100275186	-	2e-2	At4g17310	unknown protein	C.G.	S.X.	Please select
0.05	7e-6	50	Zm.16228.2.S1_x_at	CF627633	hypothetical protein LOC100275186	-	2e-2	At4g17310	unknown protein	C.G.	S.X.	Please select
0.03	5e-4	44	Zm.17754.1.A1_at	CK826899	-	-	2e+0	At4g17310	unknown protein	C.G.	S.X.	Please select
0.06	5e-4	44	Zm.11748.1.A1_at	BM380426	hypothetical protein LOC100276902	-	1e+0	At4g17310	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.4453.1.S1_at	AI714926	Hypothetical protein LOC100194310	-	6e-20	At2g01220	nucleotidyltransferase	C.G.	S.X.	Please select
0.05	3e-2	38	Zm.15424.1.S1_s_at	CD484279	-	-	2e+1	At5g19230	unknown protein	C.G.	S.X.	Please select
0.05	3e-2	38	Zm.15424.1.S1_at	CD484279	-	-	2e+1	At5g19230	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-9	63	Arabidopsis thaliana	At4g17310	827444	unknown protein	F:unknown;P:unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-8	59	Glycine max	GmaAffx.72561.2.S1_at	BG155858	-	-	2e-10	At4g17310	unknown protein	C.G.	S.X.	Please select
0.17	4e-26	117	Hordeum vulgare	Contig22648_at	Contig22648	-	-	6e-8	At4g17310	unknown protein	C.G.	S.X.	Please select
0.23	3e-58	226	Oryza sativa	Os02g0658300	AK073923.1	-	Conserved hypothetical protein	1e-11	At4g17310	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-6	52	Populus trichocarpa	PtpAffx.25638.1.S1_a_at	CV244998	hypothetical protein	-	4e-16	At4g17310	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	5e-86	317	Triticum aestivum	TaAffx.57652.1.S1_at	CA626274	-	-	1e-9	At4g17310	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621524_at	CA812233	-	-	1e+0	At1g49560	myb family transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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