CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.17334.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.6 Zm.17334.1.A1_at CK370011 - - 1e+1 Atcg00420 - S.X. H.G.
0.60 77.8 Zm.16578.1.A1_a_at CK369163 - - 3e-1 At5g37820 NIP4 S.X. H.G.
0.40 48.5 Zm.6821.1.A1_at AI396519 hypothetical protein LOC100272815 - 7e+0 At3g44805 - S.X. H.G.
0.35 38.9 Zm.889.1.A1_s_at M55021.1 - - 2e-12 At4g38740 ROC1 (ROTAMASE CYP 1) S.X. H.G.
0.22 16.9 Zm.9409.1.A1_at AY108164.1 - - 3e-1 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) S.X. H.G.
0.19 12.8 Zm.13635.1.A1_at AY107316.1 growth regulator like protein - 4e+0 At3g52070 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.0 100.0 GSM290556 CCR mutant M2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
42.5 99.9 GSM290553 WS1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
40.4 99.9 GSM290554 WS2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
29.6 99.8 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
16.4 99.0 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM258175 Mo17 11-day seedling aerial tissue biological replicate 1 GSE10236 Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.1 97.7 GSM258184 Mo17 11-day seedling aerial tissue biological replicate 2 GSE10236 Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.0 96.7 GSM258193 Mo17 11-day seedling aerial tissue biological replicate 3 GSE10236 Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.6 96.4 GSM258172 B37 11-day seedling aerial tissue biological replicate 1 GSE10236 Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.2 96.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-40 165 Zm.12376.1.S1_at BQ577893 - - 4e+0 At3g44280 unknown protein C.G. S.X.
0.40 6e-37 153 Zm.1676.1.S1_x_at BF729580 - - 9e+0 At5g24314 PTAC7 C.G. S.X.
0.28 3e-29 127 Zm.17158.1.A1_at CF636674 - - 5e+0 At5g01600 ATFER1 C.G. S.X.
0.29 3e-26 117 Zm.9804.1.A1_at CD956095 - - 4e+0 At3g22230 60S ribosomal protein L27 (RPL27B) C.G. S.X.
0.31 1e-25 115 Zm.18528.1.A1_at CF630784 - - 3e+0 At2g14095 unknown protein C.G. S.X.
0.26 2e-24 111 Zm.17158.3.A1_at BM078932 - - 4e+0 At3g08920 rhodanese-like domain-containing protein C.G. S.X.
0.14 8e-24 109 Zm.4359.2.A1_at AI795776 EMB2756 - 2e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.11 8e-24 109 Zm.4359.2.S1_at AY111092.1 - - 2e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.14 8e-24 109 Zm.4359.2.A1_a_at AI795776 EMB2756 - 2e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+1 30 Arabidopsis thaliana Atcg00420 - - Encodes NADH dehydrogenase subunit J. Its transcription is increased upon sulfur depletion. - - - C.G. S.X.
0.03 1e+0 34 Glycine max PsAffx.C7000097_s_at PsAffx.C7000097 - - 2e+0 At3g22942 AGG2 (G-PROTEIN GAMMA SUBUNIT 2) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig10730_at Contig10730 - - 9e-2 At1g25425 CLE43 (CLAVATA3/ESR-RELATED 43) C.G. S.X.
0.03 4e-1 36 Oryza sativa OsAffx.27014.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.217370.1.S1_at pmrna32601 hypothetical protein - 1e-6 At4g04030 OFP9 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9) C.G. S.X.
0.04 9e-1 34 Triticum aestivum TaAffx.85102.1.S1_at CA625573 - - 7e-8 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1615025_at CK138150.1 - - 9e-42 At5g35530 40S ribosomal protein S3 (RPS3C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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